Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10817 ATGGCCACTCTTACAGCTTATGAAGAACACCTTCCTGCATCTCCTTATTGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTGGTGGGTCTGCAGAGCATGCCAGGCCTAGTGATCCTGTATGCAAGCATAGTCAAAAAGAAATGGGCAGTGAACTCTGCTTTCATGGCCCTTTATGCTTTTGCAGCTGTTCTAATATGTTGGGTTCTTGTGTGTTACCGTATGGCATTTGGAGACAAGCTCTTTCCTTTTTGGGGCAAAGGTGCACCAGCACTAGGCCAAAAGTTTCTCATAAACCGAGCCAAAGTCCCTGAAAGTACCCATTTTTACAACAATGGTACAGCTGAAAGTCCAACATCAGAGCCCTTTTATCCCATGGCTTCCCTTGTCTATTTCCAATTTACTTTTGCTGCTATTACCCTTATCTTGTTAGCTGGATCTGTCCTTGGAAGAATGAACATCAAGGCCTGGATGGCTTTTGTCCCTCTTTGGCTTATTTTCTCTTACACTGTTGGTGCCTTCAGCCTCTGGGGTGGTGGCTTTCTCTACCATTGGGGTGTCATTGATTTCTCTGGTGGATATGTCATCCATCTTTCCTCTGGAATCGCTGGCTTCACTGCCGCTTATTGGGTTGGACCAAGGGCGAAGAGTGACAGGGAGAGGTTCCCACCAAACAATGTCCTGCTTATGCTTGCAGGTGCTGGATTGCTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCCAACATTGACTCTTCTATTGCTGTGCTTAACACTAACATATGTGCTGCCACTAGCCTACTTATATGGACCTCTCTAGATGTTGTCTTCTTTGGCAAGCCTTCAGTGATTGGAGCTGTTCAGGGTATGATGACAGGACTTGTTTGCATCACCCCAGGAGCAGGACTAGTGCAATCGTGGGCAGCTATAGTGATGGGAATACTAGCTGGGAGCATTCCGTGGGTATCAATGATGATCCTCCACAAGAAGTTAAGTTTCCTACAGAAGGTAGATGACACCCTTGGAGTGTTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGCCTCCTCACAGGTCTCTTAGCAGAACCAGACCTTTGCAGACTCATATTGCCAGTGACCAACTCAAGGGGTGCCTTCTATGGTGGTGGCGGTGGCGTGCAGTTCTTGAAGCAATTGGTGGCAGCACTTTTCATCACTGGATGGAACTTAGTCTCCACCACCCTCATTCTTCTTGCCATACAATTGTTCATACCTTTGAGGATGCCGGATGAACAGCTCGAGATCGGCGATGATGCCGTCCACGGTGAGGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATGCCACCAAGCATGGATCTTCAAAAGCGGATGAAATTGAAGCAATATCACCCTATGTTATAGGAGCTAGGGGTGTGACCATAAATTTATGA 1464 0.4734 MATLTAYEEHLPASPYWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGDKLFPFWGKGAPALGQKFLINRAKVPESTHFYNNGTAESPTSEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDFSGGYVIHLSSGIAGFTAAYWVGPRAKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDSSIAVLNTNICAATSLLIWTSLDVVFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILAGSIPWVSMMILHKKLSFLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPDLCRLILPVTNSRGAFYGGGGGVQFLKQLVAALFITGWNLVSTTLILLAIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDATKHGSSKADEIEAISPYVIGARGVTINL. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10817 487 PANTHER AMMONIUM TRANSPORTER MEP2 9 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca4g10817 487 SUPERFAMILY Ammonium transporter 17 430 - -
Seca4g10817 487 Gene3D Ammonium transporter AmtB like domains 3 451 IPR029020 -
Seca4g10817 487 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca4g10817 487 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca4g10817 487 FunFam Ammonium transporter 6 451 - -
Seca4g10817 487 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Seca4g10817 487 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Seca4g10817 487 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Seca4g10817 487 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
Seca4g10817 487 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Seca4g10817 487 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10817 Seca-Chr4 245585462 245590022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10817 130 487 Inorganic Solute Cotransporters AT2G38290 77.437 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10817 K03320 - gmx:100798599 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10817 4 245585462 245590022 Seca4g10817 4 245585462 245590022 ECH