Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10813 ATGGATTGCATTGTTGCTGGTAACTCCACCTCATCTGCAGGGTCATCTTCTAAGGCAAAGAAGAGCAAGGAGAAAAAGTGTGGGAAGAAAAAGAAAAGCAAAGGAGTGATGAAGCTTTCCACTGACCCACAAAGCGTAGCAGCCAGAGAAAGAAGGCATAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACTGTGTCTATGTTAGAAGAAGCCATTCAGTACGTGAAGTTCCTCAAGACCCAGATTTGGCTTCACCAAACCATGATTAACTTTGTGGATAATCAGTATTTCCCTAATGAACACATCATTCCCCTTCAGCAAAATCCATTAGTTGATTCTGATCTGCAGGCTTTACCACAGCTACCACTCGCACAATTCTGCTTCCAGGGTGAAGATGCCACCTTTGATGAATTGATGCCACTTTGA 456 0.4452 MDCIVAGNSTSSAGSSSKAKKSKEKKCGKKKKSKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKTQIWLHQTMINFVDNQYFPNEHIIPLQQNPLVDSDLQALPQLPLAQFCFQGEDATFDELMPL. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10813 151 FunFam Transcription factor LAX PANICLE 42 105 - -
Seca4g10813 151 Gene3D - 38 97 IPR036638 GO:0046983
Seca4g10813 151 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 124 IPR045843 GO:0003700|GO:0006355
Seca4g10813 151 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Seca4g10813 151 MobiDBLite consensus disorder prediction 1 17 - -
Seca4g10813 151 SMART finulus 45 94 IPR011598 GO:0046983
Seca4g10813 151 Pfam Helix-loop-helix DNA-binding domain 49 88 IPR011598 GO:0046983
Seca4g10813 151 MobiDBLite consensus disorder prediction 1 50 - -
Seca4g10813 151 CDD bHLH_AtIND_like 40 99 - -
Seca4g10813 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10813 Seca-Chr4 245553913 245554368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10813 29 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.000 1.78e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10813 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10813 - - pvu:PHAVU_010G073400g 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10813 4 245553913 245554368 Seca4g10813 4 245553913 245554368 ECH