Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10805 ATGGACATGGACGTGGACGAAACTTCTGGACCCAAAGAGGGAAAGCCCGTTTTGGTCATCTTAGTAGGAGCACCCGGGAGCGGGAAGTCCACCTTCTGCGAAGAAGTTATGCGTTCATCTACTCGCCCTTGGGTTCGTGTTTGCCAGGACACTATAGGAAATGGTAAAACAGGAAATAAAGCTCAGTGCTTAAGCAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAGCAGCGCTCAGACTTTATAAAGCTTGGTAGTGAACCCCAAATAGATATCCATGCAGTTGCACTTGATCTTCCTGCTAAGCTATGTATTTCTCGATCTGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAACAGGATAACATTTTGTCAGAGTGAGAATGATGTCAAAGACGCTATTAATACATACAGCGCACTTGGGCCACGGGATAACCTTCCACATGGCTGCTTTGGCCAGAAGAATCCAAATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAAGCAGAGGTCCCAGTTAATGCTGCATCTAGTGAAAATGCCATTGAAGACTCTACTTCCCGGACTCCTGCGCAAAATGATCCCCACTGCAAAGATATGGAAAAAGTTCCCTCAATTCCAGATAATACCAACTTAGAGACAAAGGACGTAGAAGGCCAGGCTGTTGGCTCTGTCGGTTCCCATGGCAATCAAGTTTCTCTGGATGATACTCCCACTCTAGCATTTCCTTCTATATCAACATCTGATTTCCAATTCAACCATGAGAAGGCTGCTGATATTATTGTTGAGAAGGTTGCAGAGTTTTCAAATAAGCTTGTGAGTGCCAGACTTGTTCTAGTTGACTTGACTCATAAGTCAAAGATTCTATCCTTAGTTAAATCCAAAGCTGCAGAAAAAAGCATTGACACCCAAAAGTTCTTTACCCATGTTGGAGACATTACTCATCTTTATTCTGCAGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCGAACTGGCGGTTAAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCAAAAACTCTTTCACCTGGGAATGCCGTTGTTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACTAGAGAGGGTGTAACCCACGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTGAACAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCATATGCTTCACTTTTTGAAGGTTTTGCATCAATTGTGAGGAAACAGGCTGAGCAGGCAAGAGGAAAAAAAGAAAACCCTGGAAAAAAGTCTTTGGAGTTGCAGGATCAGTCTGACTGTACTAGAAATCCTTTTGCAAACACTGATCACAAGAGTAAGAGAGATGCTGATCATGGATCAGAGAAAAGCAAGAAATACAAGGGAACTCTGGATGGTTTTGGGTTGACCTTTACAGGTTCTAGGGATAAAAAGGTAGATTCAGAGCGTACAAGAACTGATGACAGCATGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTACTTGAAATTTCAGAAGATGTTGTTGTATTGAATGATATGTATCCTAAGGCACAGAAGCATGTCCTGGTATTGGCACGAACCGAAGGTCTTGATAGCCTGGCAAATGTCCAAAATGAGCACCTTCAATTGTTGAAGAAGATGCATGCTGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGCAAGAGAGTGCTTCACTTGTATTTCGTCTTGGATATCACTCGGTTCCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGATTTTGATTCAAAACATTTGAAGAACAAGAAGCATTGGAACTCGTTTAACAGTGATTTCTTTCGTGACTCGGTAGATGTAATTGATGAGATCACTAATCATGGGAAGGCAACATTGAAAGATGACAAGCTACTGTCTATGGAGTTGAGATGCCACAGATGTAGAAGTGCGCATCCAAACATACCCAGGTTAAAATCACATATTAGCAGTTGCCAAGGTCCCTTTCCTGCTTACCTACTTCAAAACGGACGTTTGGTACTTCCACCAGCTGAACGTCACAACAATTTCTAG 2286 0.4217 MDMDVDETSGPKEGKPVLVILVGAPGSGKSTFCEEVMRSSTRPWVRVCQDTIGNGKTGNKAQCLSSAARALKDGKSVFIDRCNLDREQRSDFIKLGSEPQIDIHAVALDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQSENDVKDAINTYSALGPRDNLPHGCFGQKNPNSKIQVGIMKFLKKAEVPVNAASSENAIEDSTSRTPAQNDPHCKDMEKVPSIPDNTNLETKDVEGQAVGSVGSHGNQVSLDDTPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKLVSARLVLVDLTHKSKILSLVKSKAAEKSIDTQKFFTHVGDITHLYSAGGLRCNVIANAANWRLKPGGGGVNAAIFNAAGPELESATKEKAKTLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILQDAYASLFEGFASIVRKQAEQARGKKENPGKKSLELQDQSDCTRNPFANTDHKSKRDADHGSEKSKKYKGTLDGFGLTFTGSRDKKVDSERTRTDDSMSKAWGSWAQALHQIAMHPEKHKDDLLEISEDVVVLNDMYPKAQKHVLVLARTEGLDSLANVQNEHLQLLKKMHAVGLKWAEKFLQESASLVFRLGYHSVPSMRQLHLHVISQDFDSKHLKNKKHWNSFNSDFFRDSVDVIDEITNHGKATLKDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQGPFPAYLLQNGRLVLPPAERHNNF. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10805 761 FunFam Transcription factor bHLH140 324 471 - -
Seca4g10805 761 ProSitePatterns HIT domain signature. 646 664 IPR019808 -
Seca4g10805 761 Gene3D Leucine Aminopeptidase, subunit E, domain 1 335 476 IPR043472 -
Seca4g10805 761 MobiDBLite consensus disorder prediction 476 493 - -
Seca4g10805 761 Gene3D - 3 175 IPR027417 -
Seca4g10805 761 MobiDBLite consensus disorder prediction 476 524 - -
Seca4g10805 761 SMART YBR022w_8 343 622 IPR002589 -
Seca4g10805 761 Pfam AAA domain 18 144 - -
Seca4g10805 761 Pfam Macro domain 366 449 IPR002589 -
Seca4g10805 761 PANTHER APRATAXIN-RELATED 278 736 - -
Seca4g10805 761 MobiDBLite consensus disorder prediction 503 524 - -
Seca4g10805 761 FunFam Transcription factor bHLH140 6 175 - -
Seca4g10805 761 Gene3D - 559 738 IPR036265 -
Seca4g10805 761 FunFam aprataxin isoform X2 558 737 - -
Seca4g10805 761 Pfam Scavenger mRNA decapping enzyme C-term binding 566 677 - -
Seca4g10805 761 SUPERFAMILY HIT-like 554 720 IPR036265 -
Seca4g10805 761 Gene3D Leucine Aminopeptidase, subunit E, domain 1 268 334 IPR043472 -
Seca4g10805 761 SUPERFAMILY Macro domain-like 324 464 IPR043472 -
Seca4g10805 761 ProSiteProfiles Macro domain profile. 331 510 IPR002589 -
Seca4g10805 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 161 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10805 Seca-Chr4 245404176 245410546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10805 13 751 C2H2 Transcription Factor Family AT5G01310 58.728 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10805 K10863 - gmx:100786762 1254.97