Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10783 ATGGCGTCCAGCCCCCGCACCGTCGAAGAGATCTTCAAGGACTTCAGCGCTCGAAGAGAAGCCATCGTTCGTGCTTTATCTCAAGATGTTGATGAATTCTATGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGGCATTCAAATGAAACATGGGAAGTGACTCTGCCAGCAGAGGAGGTTCCACCAGAGCTTCCAGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGTGGCAGGAAACGTTTATTTAGCTTGATCAATGATCTGCCTACTGTTTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCTACTGCAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGGTTTGTGTTGTTGTTGCATGTGGGGGTAGTACTTGTCTCAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTCGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCGGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGCGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGGCGGGGCAGGCCCTAG 756 0.4762 MASSPRTVEEIFKDFSARREAIVRALSQDVDEFYGLCDPDKENLCLYGHSNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNESGRKRLFSLINDLPTVFEVVTERKPIKDKPTADSGSKSRGSTKVCVVVACGGSTCLRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGRP. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10783 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 246 IPR013083 -
Seca4g10783 251 SMART PHD_3 198 246 IPR001965 -
Seca4g10783 251 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Seca4g10783 251 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Seca4g10783 251 FunFam PHD finger alfin-like protein 191 247 - -
Seca4g10783 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Seca4g10783 251 Pfam PHD-finger 199 247 IPR019787 -
Seca4g10783 251 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Seca4g10783 251 PANTHER CPG BINDING PROTEIN 4 247 IPR045104 GO:0006355|GO:0042393
Seca4g10783 251 CDD PHD_AL_plant 198 248 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10783 Seca-Chr4 244990527 244993947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10783 2 250 Alfin-like Transcription Factor Family AT5G05610 73.307 1.47e-113 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca4g10783 Alfin 2.8e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10783 K26274 - gmx:100793126 445.277