Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10782 TATGTTTTCCTTCTTCTCTCCTTTTCACCGGTGACTCTAAATTACACACATTGCTCCTCCGGCCACAAAACTCAGGCAAAAGAAAAATACAAGGAAGGCATGGGCGTCGATTACTATAAAATCCTTCAGGTAGATCGCGGTGCCAAAGATGATGATCTCAAAAAAGCTTATCGCAAACTTGCCATGAAGTGGCACCCTGACAAGAACCCTAACAACAAAAAAGATGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCCTACGATGTTTTGAGTGATCCCCAAAAGAGAGCGGTGTATGATCAGTATGGTGAGGAGGGATTGAAGGGGCAGGTGCCTCCCCCCGGTGCCGGTGGATTTTCCGGTGGCAGTGATGGCGGTCCGACGATGTTCCGGTTCAACCCGAGAAGTGCAGATGATATATTTTCGGAGTTCTTTGGGTTTTCCAGCCCCTTTGGTGGAATGGGTGACATGGGTGGTCGTGCTGGTGCATCTGGCTTTCCCAGGGGCATGTTTGGGGATGACATTTTCACTTCTTTTAGGAGTGCGGCTGGAGAAGGCTCTGCCAATGTGCCAAGGAAAAGTGCACCCATAGAGAGAACATTGCAATGCAGTTTGGAGGATTTGTACAAAGGGACTACAAAAAAAATGAAGATTTCCAGGGATGTTACTGATGCCAGTGGGAGGCCAACCACAGTAGAGGAAATTCTAACCATTGAGATCAAGCCGGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAATGAACAGAGAGGAGTTATACCTGCAGACCTTGTTTTTATTATTGATGAGAAGCCTCATAGTGTCTTCAAGAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCTCTTGTAGAAGCACTCACAGGTTACACAGCACAGTTGACAACCCTTGATGGTAGGAATCTTAACGTCTCCATCAACTCCATCATTAGTCCAACATATGAAGAAGTTATTAAAGGAGAGGGTATGCCTATTCCTAAGGAACCTTCCAAAAAGGGAAACTTGAGAATCAAGTTTAATATCAAGTTCCCCTCCAGACTTACATCTGAGCAGAAAACTGGCGTTAAGCGATTATTGACATCTTCGTAA 1122 0.4492 YVFLLLSFSPVTLNYTHCSSGHKTQAKEKYKEGMGVDYYKILQVDRGAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSGGSDGGPTMFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGASGFPRGMFGDDIFTSFRSAAGEGSANVPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVTDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLNVSINSIISPTYEEVIKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKTGVKRLLTSS. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10782 373 FunFam DnaJ subfamily B member 13 276 356 - -
Seca4g10782 373 Gene3D - 196 274 - -
Seca4g10782 373 Pfam DnaJ domain 37 100 IPR001623 -
Seca4g10782 373 CDD DnaJ_C 195 358 - -
Seca4g10782 373 MobiDBLite consensus disorder prediction 106 128 - -
Seca4g10782 373 Pfam DnaJ C terminal domain 197 355 IPR002939 -
Seca4g10782 373 Gene3D - 276 356 - -
Seca4g10782 373 ProSiteProfiles dnaJ domain profile. 37 103 IPR001623 -
Seca4g10782 373 PRINTS DnaJ domain signature 95 114 IPR001623 -
Seca4g10782 373 PRINTS DnaJ domain signature 75 95 IPR001623 -
Seca4g10782 373 PRINTS DnaJ domain signature 39 57 IPR001623 -
Seca4g10782 373 PRINTS DnaJ domain signature 57 72 IPR001623 -
Seca4g10782 373 FunFam Dnaj homolog subfamily b member 193 274 - -
Seca4g10782 373 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 34 370 - -
Seca4g10782 373 SUPERFAMILY Chaperone J-domain 36 130 IPR036869 -
Seca4g10782 373 Gene3D DnaJ domain 36 155 IPR036869 -
Seca4g10782 373 CDD DnaJ 37 92 IPR001623 -
Seca4g10782 373 SUPERFAMILY HSP40/DnaJ peptide-binding domain 278 363 IPR008971 GO:0006457|GO:0051082
Seca4g10782 373 SUPERFAMILY HSP40/DnaJ peptide-binding domain 197 276 IPR008971 GO:0006457|GO:0051082
Seca4g10782 373 ProSitePatterns Nt-dnaJ domain signature. 80 99 IPR018253 -
Seca4g10782 373 SMART dnaj_3 36 95 IPR001623 -
Seca4g10782 373 FunFam DnaJ subfamily B member 13 36 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10782 Seca-Chr4 244981548 244986364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10782 38 102 C2H2 Transcription Factor Family AT1G74250 36.232 5.74e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10782 K09510 - gmx:100777607 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10782 4 244981548 244986364 Seca2g01529 2 27130777 27134497 PCT