Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10779 ATGGCAACCCAATTGAACCATCTATTCAGAACTTCCATTTTGAAGCCCAAGGCACAGCCAGAGACCCCTTTCACTACAATCACCACAGTAAGAACCACAAGATTTCAAGTAATTAATGCAACATCCTCCTCCACCACCAGCAGTGCCAGGCAACTCATAGAGTCTGGCACCATCAGGAGTATATGGCCAGAAGATGCTTCCACAGCTATGAATTCAGAGGGCTTCATTCTCCTTGATGTCAGGCCAACGTGGGAGAGAGAGAAGGCACGTGTGAAGGGGTCTTTGCACGTGCCAATCTTTGTGGAAGACAAGGATAACAGTCCTATAACCCTGCTTAAGAAATGGGTGCATTTTGGTTACATTGGCTTGTGGACTGGCCAATACCTCACTACCCTGAACTCTGAGTTCCTTAGTCAAGTGGAAAATGCCACTCCTGCTAAGGACACCAAGCTTCTTGTGGCGTGTGGAGAAGGATTGAGGTCAATAACAGCAGCTTCAAAGCTGTATAATGGAGGTTACAGAAATCTGGGATGGTTAGTTGGAGGTTTTAATCGTTCAAAGGACAAAGACTTCCTAGATGTAGAAGGAAAAGAGAAGTTACAGTATGCTACTGTTGGGGGAGCATCCTACTACTTCCTTCAGTTGCTCATACTTCTACAAGCTGTGGGTAAAGGATAG 678 0.4572 MATQLNHLFRTSILKPKAQPETPFTTITTVRTTRFQVINATSSSTTSSARQLIESGTIRSIWPEDASTAMNSEGFILLDVRPTWEREKARVKGSLHVPIFVEDKDNSPITLLKKWVHFGYIGLWTGQYLTTLNSEFLSQVENATPAKDTKLLVACGEGLRSITAASKLYNGGYRNLGWLVGGFNRSKDKDFLDVEGKEKLQYATVGGASYYFLQLLILLQAVGKG. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10779 225 FunFam Rhodanese-like domain-containing protein 10 58 202 - -
Seca4g10779 225 CDD RHOD 65 184 - -
Seca4g10779 225 SMART rhod_4 61 192 IPR001763 -
Seca4g10779 225 Gene3D - 58 206 IPR036873 -
Seca4g10779 225 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 10 1 224 IPR044614 -
Seca4g10779 225 Pfam Rhodanese-like domain 64 185 IPR001763 -
Seca4g10779 225 ProSiteProfiles Rhodanese domain profile. 71 195 IPR001763 -
Seca4g10779 225 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 54 184 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10779 Seca-Chr4 244949710 244951007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10779 1 211 Sulfurtransferasese or Rhodanese AT3G08920 52.133 1.23e-78 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10779 - - gmx:100795945 343.584