Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10773 ATGAGACATGGCAGAACCGCACATAACATGTCATCTTCTTCTTTGCGCAAGAAATCTGACCTCACTCTTGTCTCCAACCTTCGTTCTGGTTTCCTAAAAAATGTCCTCGTTAACTTCCAAGAGGTTATTCTCGGAACCAAGCTTTCCATTCTCTTCCCAGCCATTCCATTTGCCATCATTGCTCAATGCTATGGCTTTGCCCAACCTTGGGTTTTTGCTTTGAGCTTACTTGGACTTACCCCACTTGCTGAACGAGTCAGCTTCTTGACAGAAGCCTTATTATGTTGTTTTGGAATCACAGTGGGAGGACTTTTGAATGCAACATGTGGGAATGCTACTGAGCTCATCATTGCAATTTTTGCCCTTAGCAATAACAAAATTGCTGTGGTCAAGTATTCTCTCCTGGGTTCTATCCTTTCCAACCTTCTTCTAGTTCTTGGAACCTCTCTATTATGTGGTGGCCTTGCAAACCTTAGACAAGAACAAAAATATGATAGGAGACAGGCAGATATGAACTTGCTTATGCTTCTTCTGGCATTTTTGTGTCACTTGCTTCCAATTCTGTTCCAATATGGAGGAGGTGCCTCAGCAGCTGTCACTGCAGACTCATCTCTGCAGTTATCAAGAGTTGCTAGCATCGTGATGGTGATTGCATATATTGCTTACCTTATCTTCCAACTGTGGACTCACCGACAATTATTTGAAGCCCAGGATCAGGAAGATGATGAAGAGGGTGACAATGCTTCAGAAGAAGCAGTAATAGGATTTTGGAGTGGATTTGCTTGGCTGGTTGGGATGACTGTGTTTATTGCTTTGCTATCTGAATATGTGGTGGAGACAATTGAGGATGCATCAGATTCATGGGGTCTGTCTGTCAGTTTCCTCAGCATAATTTTGCTACCAATAGTTGGAAATGCAGCTGAACATGCAGGAGCTATCATATTTGCTTTCAAGAACAAGCTGGACATATCATTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTGGCATGTTTGTGGTTCCCCTATGTGTGATTGTTGCATGGATTCTGGGTCTCAAAATGGACCTCAACTTCAACCTCCTAGAGACAGGTTCTCTTGCTTTGGCAATAATAACCACAGCCTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTTTGCTACATTGTTATTGGGGCCTGCTTTTTTGTACAAAGAACACCCTCCAGCAGTAAGCATAATATGCAACATTGTTTTGATGTCCCATAA 1266 0.4273 MRHGRTAHNMSSSSLRKKSDLTLVSNLRSGFLKNVLVNFQEVILGTKLSILFPAIPFAIIAQCYGFAQPWVFALSLLGLTPLAERVSFLTEALLCCFGITVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLLCGGLANLRQEQKYDRRQADMNLLMLLLAFLCHLLPILFQYGGGASAAVTADSSLQLSRVASIVMVIAYIAYLIFQLWTHRQLFEAQDQEDDEEGDNASEEAVIGFWSGFAWLVGMTVFIALLSEYVVETIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVAWILGLKMDLNFNLLETGSLALAIITTAFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPSSSKHNMQHCFDVP. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10773 421 NCBIfam calcium/proton exchanger 33 402 - -
Seca4g10773 421 NCBIfam calcium/proton exchanger 53 402 IPR004798 GO:0006816|GO:0015369
Seca4g10773 421 Gene3D - 98 243 IPR044880 -
Seca4g10773 421 Gene3D - 245 402 IPR044880 -
Seca4g10773 421 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 406 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca4g10773 421 FunFam Vacuolar cation/proton exchanger 99 244 - -
Seca4g10773 421 Pfam Sodium/calcium exchanger protein 259 397 IPR004837 GO:0016020|GO:0055085
Seca4g10773 421 Pfam Sodium/calcium exchanger protein 69 228 IPR004837 GO:0016020|GO:0055085
Seca4g10773 421 FunFam Vacuolar cation/proton exchanger 247 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10773 Seca-Chr4 244899739 244902665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10773 1 410 Antiporters AT2G38170 74.272 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10773 K07300 - gmx:100782052 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10773 4 244899739 244902665 Seca4g10773 4 244899739 244902665 ECH
Seca4g10773 4 244899739 244902665 Seca2g01549 2 27705165 27709329 PCT