Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10751 ATGCTGGAGCAACTTAATAATGCAACATCTGGTTTTGCTGTTGAGAATATTGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGAAAGATGGAGAATCAAATGAGGATTGTTGTTAAGCGGTTTGATAGAAATGCTTGGCCTGATGCTCGACAGTTTTTGGAGGAAGCTAGATCCGTTTGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGGCGATGAGAGATTGCTTGTGACCAAATATATGCCCAATGAAACACTAGCAAAACACCTTTTCCATTGTAATATCTCTTTTTATGCATATGTTATCCTTTTTATTTTGGAAATTTGA 357 0.3697 MLEQLNNATSGFAVENIVSEHGEKAPNVVYKGKMENQMRIVVKRFDRNAWPDARQFLEEARSVCQLRNQRLANLLGCCCEGDERLLVTKYMPNETLAKHLFHCNISFYAYVILFILEI. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10751 118 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Seca4g10751 118 FunFam probable serine/threonine-protein kinase At4g35230 1 90 - -
Seca4g10751 118 Pfam Protein tyrosine and serine/threonine kinase 28 101 IPR001245 GO:0004672|GO:0006468
Seca4g10751 118 SUPERFAMILY Protein kinase-like (PK-like) 22 115 IPR011009 -
Seca4g10751 118 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 2 103 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10751 Seca-Chr4 244588126 244590215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10751 3 100 Trihelix Transcription Factor Family AT4G32710 34.694 9.58e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca4g10751 PK_Tyr_Ser-Thr 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10751 K14500 - gmx:100799260 194.126