Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10748 ATGGATTGGAAGCCTAGTGTTGGCAAGGAATTTGATGATCCTGAAGAAGCCTGGCATTTTTGGGTAGAATACGGTTCAAAAATGGGTTTTGGAGTTAGAAAAAATTACTTCAACAAAAGGAAGAAAGATGGTTCCATTACATCTTGTAGATTTGTTTGTTGTAAGGAGGGGAAGAAGAATAACAAACCATCCTTGGTTAAAAAGCCCAGGGCTGATACAAGAACTGAGTGTCAAGCAAGAATAGCACTTGTTGCGAAAAACGGTAAGTTTGTAATTCATGAGTTTGTAGAGAACCATAACCATCCTTTACAACATGCAGAAACAACCCATATGCTAGCATCACACCGTAAAATTTCAGAAGTTCAAGCATATGAGATTGAAATGTCAGAGGACTCTGGATTGATGCAAAAGGCTTCATTTCAGCTTATGAGCACGCATGCAGGAGGTAGAGCTAATCTTGGATATACACGGTTGGATGTGAAGAACTATCTCCAAGCAAGAAGACAACATAGCATGGTGTATGGGGAAGCCGGTTGTCTCTTACAGTATTTTCAACGGCAACTTTTGGAGAATCCATCATTTTACCATGCATATCAAATGGATTGTGATGAACAAATCACAAACGTATTTTGGGCCGATGCAAAAATGATCCTGGACTATGGATTCTTTGGTGATGTTGTCTCTTTGGATACAACATATTGCACCAACCGTGCTAATAGACCACTAGCTTTGTTTTCAGGCTTCAATCATTATAGGGGTACAATCATTTTTGGGGCTGCATTATTATATGATGAGACTGCTGATTCATTCAAATGGTTATTTGAAACATTCCTTGAAGCACATGGGAAGAAGAAGCCTCAAACTTTGTTCACTGACCAAGACCAAGCAATGGCTAAAGCACTAGCTCAGGTGATGCCAGAGACTCGGCATGGTTTATGCACATGGCATTTAATGCAGAATGGAATCAAACATCTCAGAAACTTGATGAAGAGAGGAAGCCATTTCTTGACTGATTTCAAAAAGTGTATGTATGATTATAACCAAGAAGTGAAGTTTGAGGCGGCTTGGAGTAAGTTGGGCATAGAATTTAATGTCAATGAAAATAACTGGGTGAAATCAATGTATGCTATTAAGGAAAAGTGGGCAGCATGTCACATGAAGGAAGCCTTCACCTTAGGTATGCGAAGCACTCAACTTAGTGAGAGTTTGAACTCAAATTTTAAGGCTTGCATGAGACCGAACCTCAATGTCACTCAATTCTTCAAGGACTTCGAAAGAGTTGTTGAGGAGAAGCGATACAATGAGTTGATTTGTGAATATGAGTCTCGACATAAACTTGCAAAGTTGAGATATGAACATTCTCCAATGCTACTAAATCTTGCAGAGGTATACACACCTATAATTTTTGATGTGTTTACTAATGAGTTTGCTTTATTTTTAGATGCTTGCATACGAGAAAGGGATGTATCTCAAATTCCGTTTGAGTATGTCGTTACCTTGGTCAATGAGGAAGGAGAGTGGAGAGTGTTATTTGATCTAATACAAATCTCCATATTATGTAGTTGTAGAAAATTTGAGACATTTGGGATACTTTGTTGCCATGCATTGAAGGTGTTTGAGGCAAATGATATTAAACTTGTTCCCAATCAATACATCCTAAAAAGGTGGACAAGAGATGCACGCAATGGTATTATACTGGACACAAGGAAAAATGAGGTTGTGGCAGATCCCAAATTAGATAGCACACGGCGATATAAGCAAGTTTGCCTCTCTATGATTAGATTAGCAGCTGAGGTCTCTACTTCTGAAAAATTGCACCAAATTGTAGAACAAGGAATTCATGACTTGTGGAAGAAAGTAAAGGAGGTTCGGTTAGAAGATAATATAATGGCCAATGATGAATATAGTGCTCCGATACTAGCAAGAGAAGATGAGACACAAGTAAAGGGGTTTAAGGAGCGAGTTGGGCCGAGGAGACACAAACGACTAAAAGGTTGGGTTGAGCTTCAATCTACAAAAAAAAGAAAGGATAAAACTCTAAAGGCTACACCAAGTCAACAACATATGGTATATAATTTTATGGTTATAACAATATTTGTGTTGCCTTTCTTACCTATTTATTAA 2124 0.3828 MDWKPSVGKEFDDPEEAWHFWVEYGSKMGFGVRKNYFNKRKKDGSITSCRFVCCKEGKKNNKPSLVKKPRADTRTECQARIALVAKNGKFVIHEFVENHNHPLQHAETTHMLASHRKISEVQAYEIEMSEDSGLMQKASFQLMSTHAGGRANLGYTRLDVKNYLQARRQHSMVYGEAGCLLQYFQRQLLENPSFYHAYQMDCDEQITNVFWADAKMILDYGFFGDVVSLDTTYCTNRANRPLALFSGFNHYRGTIIFGAALLYDETADSFKWLFETFLEAHGKKKPQTLFTDQDQAMAKALAQVMPETRHGLCTWHLMQNGIKHLRNLMKRGSHFLTDFKKCMYDYNQEVKFEAAWSKLGIEFNVNENNWVKSMYAIKEKWAACHMKEAFTLGMRSTQLSESLNSNFKACMRPNLNVTQFFKDFERVVEEKRYNELICEYESRHKLAKLRYEHSPMLLNLAEVYTPIIFDVFTNEFALFLDACIRERDVSQIPFEYVVTLVNEEGEWRVLFDLIQISILCSCRKFETFGILCCHALKVFEANDIKLVPNQYILKRWTRDARNGIILDTRKNEVVADPKLDSTRRYKQVCLSMIRLAAEVSTSEKLHQIVEQGIHDLWKKVKEVRLEDNIMANDEYSAPILAREDETQVKGFKERVGPRRHKRLKGWVELQSTKKRKDKTLKATPSQQHMVYNFMVITIFVLPFLPIY. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10748 707 Pfam MULE transposase domain 226 320 IPR018289 -
Seca4g10748 707 SMART 26again6 518 545 IPR006564 GO:0008270
Seca4g10748 707 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 3 621 IPR031052 GO:0006355
Seca4g10748 707 ProSiteProfiles Zinc finger SWIM-type profile. 496 543 IPR007527 GO:0008270
Seca4g10748 707 Pfam FAR1 DNA-binding domain 20 104 IPR004330 -
Seca4g10748 707 Pfam SWIM zinc finger 517 541 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10748 Seca-Chr4 244533987 244536110 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g10748 MULE 1e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10748 - - smil:130990021 848.966