Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10743 ATGGAAGGGAAAGATGAAGATGTGAGATTGGGAGCCAACAGGTACAGAGAGAGGCAACCAATAGGAACTGCTGCTCAGGCTCCAGATAGCAGAGACTACAAAGAACCTCCCTCTGCACCTCTCTTTGAGCCTGGGGAGTTATCATCATGGTCTTTCTACAGAGCAGGAATAGCAGAGTTTGTGGCAACATTCTTGTTTCTTTACATCACAGTGTTAACAGTGATGGGTGTGGCCAAATCAAACAGCAAGTGTTCCACAGTTGGTGTCCAAGGCATAGCTTGGGCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACTGCTGGCATCTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCACGCAAGCTGTCTCTGACAAGGGCAGTGTTTTACATAATTATGCAGTGTTTGGGAGCTATATGTGGTGCTGGCGTAGTTAAGGGGTTCCAACCACACCAATATGAGAGGCTTGGTGGTGGTGCTAACAGTCTTAGTAAAGGATACACCAAAGGTGAAGGCCTTGGGGCAGAGATTGTTGGCACATTTGTGCTTGTTTATACTGTCTTCTCTGCTACTGATGCCAAGCGAAACGCTAGAGACTCCCACGTTCCTGTAAGCAAAAAATCTTAA 648 0.4676 MEGKDEDVRLGANRYRERQPIGTAAQAPDSRDYKEPPSAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSNSKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQPHQYERLGGGANSLSKGYTKGEGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPVSKKS. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10743 215 MobiDBLite consensus disorder prediction 1 37 - -
Seca4g10743 215 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 212 IPR034294 -
Seca4g10743 215 Pfam Major intrinsic protein 46 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g10743 215 SUPERFAMILY Aquaporin-like 47 209 IPR023271 -
Seca4g10743 215 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Seca4g10743 215 Gene3D Glycerol uptake facilitator protein. 39 214 IPR023271 -
Seca4g10743 215 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g10743 215 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g10743 215 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g10743 215 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10743 Seca-Chr4 244418373 244419499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10743 1 211 Major Intrinsic Protein MIP AT4G00430 84.360 3.48e-134 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10743 K09872 - cave:132192212 401.749