Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10742 ATGGATCAGATTTTGGCACCACTGCCTATTGGTTTTGCTGTCTTTCTGGTGCATTTGGCTACAATTCCTATTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCCTTATATACAACAAGGACCAAGCTTGGGACGACCATTGGATTTTTTGGGTTGGGCCTTTCATTGGAGCAGCACTTGCAGCTCTGTACCATCAGATAGTAATCAGGGCCATTCCCTTCAAGTCAAAGTGA 243 0.4609 MDQILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10742 80 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 76 IPR034294 -
Seca4g10742 80 Pfam Major intrinsic protein 4 68 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g10742 80 Gene3D Glycerol uptake facilitator protein. 1 79 IPR023271 -
Seca4g10742 80 SUPERFAMILY Aquaporin-like 4 72 IPR023271 -
Seca4g10742 80 PRINTS Major intrinsic protein family signature 11 33 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g10742 80 PRINTS Major intrinsic protein family signature 51 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10742 Seca-Chr4 244417405 244418268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10742 4 80 Major Intrinsic Protein MIP AT4G23400 97.403 3.01e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10742 K09872 - cave:132192212 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10742 4 244417405 244418268 Seca2g01627 2 29307567 29309955 PCT