Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10735 ATGCCTTCCTCTTCCACAACCATTGTTTCTAAATGCATAGTCTACCCAGAGCACAAATCAACATTGAAACCCCTTAAGCTCTCTGTCTCGGACCTTCCGATGCTTTCGTGCCATTACATCCAAAAGGGTGTCTTGCTCACTGCCCCACCTTACTCCTTTGATGACTTCATTCTCACTCTCAAACACTCCCTCTCCGTCGCACTCTCCCACTTCCCTGCCCTCGCCGGCCGCCTCACGACTGATTCCGACGGCTACGTTTACATAACCTGCAACGACGCCGGCGTCGAATTCATCCACGCCAAGGCTAAGCACCTTACCCTAAACGCCGTCGTTTCACCCTCCCTCGTCGACGTACACCCTTGCTTCAAGGAGTTCTTCGCCTATGACATGACCGTTTCTTACTCTGGTCACCAAATTCCCCTGGCCGCCGTCCAGGTCACCGAGCTCGCCGACGGCGTTTTCGTCGGCTGCACCGTCAACCACTCCGTCACCGACGGTACCTCCTTCTGGCACTTCTTCAACACCTTCGCCGCCGCCGCCAAGAGCGGCGGCGCGAAGAAGATCACGAAGTCGCCGGACTTCACCCGTGACACCGTCTTCAACTCTGAAACCGTCCTCCCCGTCCCCGCCGGCGGTCCCGCCGTCACCTTCGACGTCGACGCACCTCTCCGGGAGCGAGTCTTTCACTTCTCCCGCGAAGCCATTCAGAAACTCAAACAGAGAGCCAACGGCAACGGAATCCCGGATTTCGCGGAAGTAATAGGTAAACAGGTGAATGACGGTTGGAAAGTCGTTAACTGTAATGGTAACGGAAAGACAACTCCCGTTGCTAACGGTAACGGAAGAAACGAGATCTCGTCGTTTCAATCCTTGTCCGCTCAACTATGGCGTTCAGTGACGCGTGCCAGGAAATTGGACCCTTCGAAAACGTCGACGTTTCGCATGGCCGTGAATTGCCGTCACAGGTTGGAACCAAGGATGGACCCGTTTTACTTCGGCAATGCGATTCAGAGCATCCCAACCGTTGCTACTGCGGCTGACATAATCTCTCGCGATCTACGCTTCTGCGCAGAATTGCTTCATCAAAACGTCGTCGCACACGACGACGCTACGGTGCGCCGCGGCATACAGGATTGGGAGAAGGCACCGAGACTGTTCCCGCTTGGGAATTTCGACGGCGCAATGATCACCATGGGTAGCTCCCCGCGTTTTCCCATGTACGACAACGACTTCGGGTGGGGCCGGCCCTTGGCCATTCGAAGTGGCAAGGCGAACAAGTTTGACGGCAAGATCTCTGCGTTTCCTGGAAGAGAAGGAAACGGCAGCGTTGATCTTGAGGTTGTTTTGGCCCCTGAAACGATGGCTGGGCTCGAAAACGACATGGAGTTTATGCAGTACGTGACGCCAACCGAAGTGTGTGTGGTATAA 1428 0.5518 MPSSSTTIVSKCIVYPEHKSTLKPLKLSVSDLPMLSCHYIQKGVLLTAPPYSFDDFILTLKHSLSVALSHFPALAGRLTTDSDGYVYITCNDAGVEFIHAKAKHLTLNAVVSPSLVDVHPCFKEFFAYDMTVSYSGHQIPLAAVQVTELADGVFVGCTVNHSVTDGTSFWHFFNTFAAAAKSGGAKKITKSPDFTRDTVFNSETVLPVPAGGPAVTFDVDAPLRERVFHFSREAIQKLKQRANGNGIPDFAEVIGKQVNDGWKVVNCNGNGKTTPVANGNGRNEISSFQSLSAQLWRSVTRARKLDPSKTSTFRMAVNCRHRLEPRMDPFYFGNAIQSIPTVATAADIISRDLRFCAELLHQNVVAHDDATVRRGIQDWEKAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPLAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDMEFMQYVTPTEVCVV. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10735 475 SUPERFAMILY CoA-dependent acyltransferases 59 182 - -
Seca4g10735 475 Pfam Transferase family 6 464 - -
Seca4g10735 475 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 465 - -
Seca4g10735 475 Gene3D - 212 460 IPR023213 -
Seca4g10735 475 Gene3D - 6 207 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10735 Seca-Chr4 244321992 244323419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10735 60 459 Monolignol Biosynthesis Gene Families AT5G48930 26.603 8.01e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10735 - - gmx:100780358 810.061