Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10734 ATGAACAGGGGAATTGAAGTTCTTTCTCCAGCTTCTTATCTTCAGAATTCCAATTGGTTGTTCCAGGAAAGTAAAGGAACCAAATGGACACCAGAAGAGAACAAACGGTTTGAGAGTGCCTTGGCTTTATTTGATAAGGACACTCCAGATCGTTGGGTGAAGGTGGCAGCCATGGTTCCTGGTAAGACTGTTGGTGATGTGATCAAACAGTACAAAGAACTGGAAGAAGATGTGAGTGTCATTGAATCTGGGTTGATCCCAATTCCTGGGTACACTACTGGTTCTTTCACGTTGGAATGGGTCAACAATCAAGACTTTGATGAGTTCAACCAATTCTATAGTGTTTGTGGCAAAAGGGGTACTTCCACTCGGCCATGTGAGCAGGAAAGGAAGAAAGGGGTGCCATGGACTAAAGAGGAACACAGGTTATTTGCACTTTCACATCATCAACCTTTTTTGAATCATCACAGGCAATTTCTGTTGGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAGCATATCTCGCAATTTTGTGACCACAAGGACACCAACACAGGTTGCAAGTCATGCTCAGAAGTATTTCATTAGGCAGCTTACAGGAGGAAAGGATAAGAGAAGATCAAGCATCCATGACATCACAGTGGTCAATCTTCCAGAAACAAAATCAGGGCCAGACAGTAACTTACCTCCTTCTCAAGATCACTCAGTGAAGGCTGTGAATCCACATCAGAATCAGAAATTGTCTAGCATGGTTAAACAGGAATGTGACTGGAAACTGTCATGTGAGGGCATGCCTATGGTTTTCAATTCCACAAATGGAAACATGTTCATGACACCACTGCATGGGATTTCTTCATATGGATCTAAACCACAGGAGCAGTATTTACTCAGAAGTACTCTCCATGGGTGTCAATTTGGACCTTATGATACTATTATGCAAATGCAATCAATGCAACATCAGTGA 966 0.4244 MNRGIEVLSPASYLQNSNWLFQESKGTKWTPEENKRFESALALFDKDTPDRWVKVAAMVPGKTVGDVIKQYKELEEDVSVIESGLIPIPGYTTGSFTLEWVNNQDFDEFNQFYSVCGKRGTSTRPCEQERKKGVPWTKEEHRLFALSHHQPFLNHHRQFLLGLKKYGKGDWRSISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITVVNLPETKSGPDSNLPPSQDHSVKAVNPHQNQKLSSMVKQECDWKLSCEGMPMVFNSTNGNMFMTPLHGISSYGSKPQEQYLLRSTLHGCQFGPYDTIMQMQSMQHQ. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10734 321 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Seca4g10734 321 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 198 IPR006447 GO:0003677
Seca4g10734 321 Gene3D - 153 199 - -
Seca4g10734 321 SUPERFAMILY Homeodomain-like 155 198 IPR009057 -
Seca4g10734 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 199 IPR017930 -
Seca4g10734 321 Pfam Myb-like DNA-binding domain 135 195 IPR001005 -
Seca4g10734 321 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Seca4g10734 321 Gene3D - 21 88 - -
Seca4g10734 321 FunFam Transcription factor SRM1 21 88 - -
Seca4g10734 321 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Seca4g10734 321 CDD SANT 135 195 IPR001005 -
Seca4g10734 321 CDD SANT 28 74 IPR001005 -
Seca4g10734 321 MobiDBLite consensus disorder prediction 218 248 - -
Seca4g10734 321 SMART sant 132 197 IPR001005 -
Seca4g10734 321 SMART sant 25 77 IPR001005 -
Seca4g10734 321 FunFam transcription factor MYB1R1 153 200 - -
Seca4g10734 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 253 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10734 Seca-Chr4 244195101 244196375 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g10734 Myb_DNA-binding 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10734 - - gmx:778077 486.108