Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10730 ATGGGGGTAGAATATCGTGTGCAAGAAGTGATTCAAAAATTGAACAACCAACAATCAAAAGATCCTATGCTATTAGGGATATGGGGCATGGGAGGGATTGGCAAAACAACCATTGCCAAAGCTGTTTATAATCAAATTCGTCACGATTTTGAGGCTAAGAGCTTCCTCCTAAATGTCAGGGAAGGAGCTTGTAACAATAGCAATATTGTTTCTTTACAACAAAAGCTTCTTTCTGATATCTACAAAACAACACAGATAAAGATAGATACAGTTGAATCAGGAAAAATGATATTACCGGAGAGACTTCACCAGAAGAAGATATTTCTTGTGCTTGACGATGTGGATAAAGAAGAACAATTGAATGCTTTATGTGGAAGTCCTCTTCAAGTCATTGGGTCCTCTCTGTTGACTACAAGGAGGACAGTAGAGTGGGAGAGTGTATTGGAGAAACTTAAAGTCATTCCCAATGATAAAGTACTGGAGAAGCTTAGAATAAGTTTTGATGGTTTGAGTGATGAAGACATGCAAGAAATATTCCTTGATATAGCTTTTTTCTTTATTGGGATGGACCAGGATGACGTAATTAAGATATTAAAAGACTGTGGGTATTTCCCAGAAAGGGGAATAAGTGTCCTCATACAAAGAAGCTTGGTAAGTGTTGATAGGAAGAATAAGGTTAGAATGCATGACTTGCTACGAGACATGAGAAGAGAAATCGTCCACAAGGAATCGAAAAAGAGGGGCAAGGAGCCTAGTAGGTTATGGCGTTATGAGGATGCCAAACATGTCTTATCAAAAGATATTTTGTTGGAGAAGCTGAAAATTCTCAATCTTAGTCATTCTCATAACTTGAGACAAACCCCAGACTTTTCCAACTTGCCAAATCTTGAAAAGTTAGTACTCAAGGATTGTCCAAATTTATCACTGGTTTCTCCTACCATAGGACAACTTAAGAATATTCTTTTGATAAATTTGAAAGATTGCACGGGCCTTCGTGAACTTCCAAGGAACATCTATAAGTTAGCGTCGTTGAAAACTCTGATCTTGTCTGGATGCACAAATTAA 1065 0.3765 MGVEYRVQEVIQKLNNQQSKDPMLLGIWGMGGIGKTTIAKAVYNQIRHDFEAKSFLLNVREGACNNSNIVSLQQKLLSDIYKTTQIKIDTVESGKMILPERLHQKKIFLVLDDVDKEEQLNALCGSPLQVIGSSLLTTRRTVEWESVLEKLKVIPNDKVLEKLRISFDGLSDEDMQEIFLDIAFFFIGMDQDDVIKILKDCGYFPERGISVLIQRSLVSVDRKNKVRMHDLLRDMRREIVHKESKKRGKEPSRLWRYEDAKHVLSKDILLEKLKILNLSHSHNLRQTPDFSNLPNLEKLVLKDCPNLSLVSPTIGQLKNILLINLKDCTGLRELPRNIYKLASLKTLILSGCTN. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10730 354 SUPERFAMILY RNI-like 154 352 - -
Seca4g10730 354 Pfam NB-ARC domain 4 143 IPR002182 GO:0043531
Seca4g10730 354 Gene3D Ribonuclease Inhibitor 231 354 IPR032675 -
Seca4g10730 354 PRINTS Disease resistance protein signature 101 115 - -
Seca4g10730 354 PRINTS Disease resistance protein signature 24 39 - -
Seca4g10730 354 PRINTS Disease resistance protein signature 339 354 - -
Seca4g10730 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 182 IPR027417 -
Seca4g10730 354 Gene3D - 1 153 IPR027417 -
Seca4g10730 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 270 353 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10730 Seca-Chr4 244159569 244163356 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10730 125 264 WRKY Transcription Factor Family AT5G45050 39.437 1.07e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10730 - - tpra:123891787 291.197