Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10727 ATGTCTTCTTCTATTAATATAGATAGTGCTTTGTCTTTTTTAGAGAGCTATATCGATGATGATAGTGAGAACTTCAATGGCGATGATTTGGCGAGCCAACTCGAGAAGTATCCACTCGAGAAGTATCCCAGTATAGAGATCGATTGGGATAGCATATCAAATCCGGATCCCATCAGAAGGACCTACGACGTGTTCTTGAGTTTTAGAGGGGAGGACACTCGTGCATCCTTCACTTCACATCTCTTTGCCTCTCTTCAGAATGACGGAATTACTGTTTTCAGGGACGATGATTCGCTTCCAAGGGGAGACCATATTTCAACCTCTCTACTGCGAGCAATCGAAGAGTCTCAGATTTCCGTTATTGTTTTCTCAACAAATTATGCGAATTCACGTTGGTGTCTGCGAGAGTTGGAGAAGATAATGGAGTGTCACAGAACCATAGGTCAGGTGGTTCTGCCGGTGTTCTATGATGTAGATCCCTCAGAAGTACGTCATCAAACAGGTGAGTTTGGAAAAGCATTTCAAGATCTTATAAGGGAGTGTGAACGCAATTGGCTGAGTTTGAAGACGCCAAGTGAGTCTTGGACAGTGGAGAGGTGGAGGATGGCGCTTAGTGAGGCTGGTGGCATTGCAGGGTTTGTAGTCCTAAATTCCAGGAACGAAAGTGAGGCTATCAAGGATATCGTTGAAAATATTACACGTTTGCTTGACAAGACAGATTTGTTCATTGCTGATAACCCAGTGGGAGTTGAATCTCGAGTGGAAGATATGATTCAACTGATAGATAACAAACAATCTAATGATGTTGTACTACTAGGGATGTGGGGCATGGGAGGAATTGGTAAAACAACCATTGCAAAGGCCATTTACAACAAAATTGGCCGCAATTTTGAGGGTAGGAGCTTCCTTGCAAATATTAGGGAAGTGTGGGAGCAGGATGCTGGACAAGTGTATTTACAAGAACAACTTCTGTTTGATATCTTCAAGAAAAGAACAATCAAGATACATAGCACTGAATCAGGAAAAAATATATTAAAGGAAAAACTCTGCCATAAAAGAGTCCTGATTGTACTTGACGATGTGAATAAATTGGACCAACTGAATGCCTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGGGATATGCATATGCTTAGAGGGAATAGAGTTGACCAAATATACATAATGAAAGAAATGGATGAAAGTGAATCTATTGAGCTTTTTAATTGGCATGCATTCAAGCAAGCGAGTCCAAGAGGAGATTTTGTTGGAATTTCTAGAAATGTAGTTGAGTATTCTGGGGGACTGCCGCTAGCTCTTGAAGTCCTTGGATCCTATTTGTTTGATAGGGGGATAACAGAGTGGGAGTGTGTATTGGAGAAACTGAAAAGAATTCCCAATGATCAAGTACAGAAGAAGTTAAAAATAAGCTATGATGGTTTAGATGATGATACAGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATACATATATTAAATGGATGTGGACTTTTTGCAGAAATTGGAATAAGCGTCCTTGTTGAGCGGAGCCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGACTTGCTGCGAGACATGGGAAGAGAAATCATTCGTGAGAAATCACCAAAGAAGCTCCAAAAGCGTAGTAGGTTATGGTTTCAGGAGGATGTGCTTGACGTACTATCAGAGAAAACAGGAACAGATGCTGTTGAGGGACTGGCTTTGAAGTTGCCAAGAACTGATAAACAACCTTTGAGTACTAAAGCATTTAAGAACATGAAGACACTCAGATTACTTCAATTTGCTGGTGTACAACTTGATGGGGATTTTAAATATCTTTCAAGAAATCTCAGATGGTTGTGTTGGAATGGATTTCCTTTAACATGCATACCTACAAACTTTTGTCAAGGAAGTTTAGTTTCCATTGAGTTAGAAAACAGCAATGTCAAATTTGTGTGGGAAAAGTCACAGAGGTTGGAGAAGTTAAAAATTCTCAATCTTAGTCATTCTCATCACTTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTTGAAAAGCTAGTACTAACAGATTGTCGAAGCCTATCTGAAATTTCCCATACCATTGGACATCTCAATAAAGTTCTTCTAATAAATTTGAAAGGCTGTGTTAGCCTTTGTAGCCTTCCAAGAAGCATCTATAAGTTGAAGTCTCTGAAAACTCTCATTCTTTCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACTTGGAACAGATGAAATCTTTGACAACCCTGATTGCAGATAACACTGCAATAACAAGAGTGCCCTTTTCATTAGTAAGGTCAAAAAGCATTGGTTATATTTCTTTGTGCGGCCATGAAGGATTATCACGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACGAATTATCTCTCATCCCTAATTCAAACACCTGTGAGCATGTCATCTCTTGTGTCTTTAGATGTACCAAATAGTAGTTCCCACGAACTATCATCTATTTTCAAGGACCTTCCAAAGCTTCGAAGTCTTTGGGTGGAATTCGGCTCTGAACTTCAGCTTTCTCGAGATGCAGCAACAATTTTGGATGCCTTGTATGCCACAAATTGTAAGGAACTTGAATCAACTGCAACTACATCACAAGCATCAAATATTGAAACTTCTGGTTTACTTGAATGCAGCAAAAATTCCTTGAAATCTCTTTTAATTCAAATGGGAATGAATTGCCAAGTGACCAATATTCTGAAGGAAAGCATTACACAGAGCATGACTATCAGTGGGTGTGAAGTTGGTTTGCTCCCGGGTGACAATTATCCAAATTGGTTAACCTTCGATTGTGAAGATTCTTCTGTAATTTTCGAAGTCCCTCAAGTGAATGGGCGTAACTTGAAGACAATGATGTGCATTGTCCATTATTCTACCCCAGATGACATAGCATCAGATGGCCTTAAAAATTCAAGGATATTCGATGTGTTCTTGAGTTTCAGAGGAGAAGACAGTCGTGCATCATTCATTTCGCATCTCTATAGCTCTCTTCAAAATGCTGGGCTTTATGTTTTTAAGGACGATGATGAAATTCAAAGGGGAGATCAAATCTCAGTCTCATTATTGCGAGCAATCAGAAGGTCTAGAATTTCTATCATTGTATTGTCGAAAAATTATGGTAATTCAAGATGGTGTTTGCAAGAATTGGAGAACATAATGGAAAGTCGCAGAACTATGGGTCTAGTGGTTGTGCCAGTGTTCTATGGTGTAGATCCCTCAGATGTACGACAACAGACAGGTGAGTTTGGAGAAGGTTTTCAAAATCTTATTAAAGGAATCTCAGTGGAAACAACAGTGAGGAATTGGAGGATAGCGCTCCTTGAAGTTGGTGGCATAGCAGGGGTTGTTGTCTTAAATTCCAGGAATGAAAGTGATGATATCAAGAAAGTTGTTGAACAAGTTACTGGATTGCTAGACAAGACAGACTTGTTTGTTGCTGAGCATCCAGTGGGGCTAGAAGATCGTGTGGAACGTGTTATTCAACTAATGAGTAAAAATCAATTACTAGGGGTATCAGGGATGGGAGGACTTGGTAAATCAACCATTGCCAAAGCTGTTTACAATCGAGTTCGTCACAACTTTGAGGCTAAGTGCTTCCTCCTAAATATCAGGGAAGCTTGTGAACAAAACAATGGCAATATTGTTTCTTTACAACAAAAGCTTCTCTCTGATATCTACAAAACAACAAAGATAAATATAGATACAGTTGAATCAGGAAAAACAGAATTAAGGAAAAGACTTAGCCAAAAGACAATATTTCTTGTGCTTGATGATGTGAATGAAGAAGAACAATTGGATGCTTTATGTGGAAGTCGCACATGGTTTAGCCATGAAAGTAGGATAATCATCACTACAAGAGATGATGATTTACTTAGCAAGCTTGGAGTTGACTATATATATAAAATGAAGGAAATGAAGAAAAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCAAGAGAGGGTTTTGCTGAACTTTCTAGAGATGTGGTTGAATATTGTGAAGGGTTGCCACTAGCTCTTCAAGTCATTGGGTCTTTTTTGAGAACAAGGGGGGAAAAAGTGTGGAAGAGTGTATTGGAAAAACTCAAAATTATTCCCCATAAAAAAGTGCAGAAGAAGCTCAGAATAAATTTTGATGGTTTAGGTGATGATAAAGTGCAAGAAATATTTCTTGATATAGCTTTTTTCTTTATTGGGATGGACAGAGATGAGGTAATTGAGATATTAAATGAGTGTGGACATTTTGCAGAAATTGGAATAGATATTCTTGTACAACAAAGTCTTGTAACTGTTGACAATAAGAACAAGCTTGGTATGCATAGTTTGCTACGAGACATGGGAAGAGAAATCGTTCGTGAGAAATCACCAGAGGAGGTAGAGAAGCGCAACAGATTATGGTTTTATGAGGATACACTTAAAGTGTTATCAAAAAACACTAGAATGACAGATGTTCATGGACTGAGTTTGAAGTCACAATGTGTGAATACAACAACTTATTATTTGGAAACCAAAGCATTTGAGAAAATGGATAAACTTAGATTGCTTCAACTAGCTGGTGTACAACTTGATGGAAATTATAAATATCTTTCAACAGAACTTAGATGGCTCTGCTGGCATGGATTTCCTTTAAAATATACACCTGCAAACTTTTATCAAGAGAGTTTAGTTGCCATTGACTTAAAATACTCCAATTTGGAACGGGTTTGGAAGAGGTCCCAGTTGCTGAAGAAGTTGAAATTTCTCAATCTTAGTCATTCTCCTAAATTGACACAAACCCCAAACTTCTCGAACTTACCAAATCTTAAAAAGTTAATACTCAAAGATTGTACTAGTTTGTCTTCGATTTCTCATACTATTGGAAACCTCAATGAACTACTTCTGATAAATTTGAAGAACTGTACAAGTCTTCGTGAACTTCCAAAAAGCATCTATAAGTTGAAGTCATTAAAAACTCTGATTTTGTCTGGATGTACAAAAATTGACAAGTTGGAAGAAGACATAGAACAGATGGAATCTTTAACCACCCTGGTTGCTGATAACACTGCTATAACAAGAGTGCCCTTTGCAATAGTAAGATCAAAAAGTGTTGGCTATATTTCTTTGTGTGGCTATGAAGGATTCTCACGTAATGTGTTTCCTTCAATTATACGGTCTTGGGTGTCTCCAACTAATAATATCTTATCTCGATTTCAAACATCTTCTGCGGGCACATCATCTCTTGATCTCTTAGATGAACAAAATAGCACTTTCTATGGCGTATCACGGAAAGATCTTCAGAAGCTTCAACGCCTTTGGGTGAAGTGTGAATCAGAAGTTCAGTTAAATCAAAATGTAGAAAGAATTTTGGATTCCTTAGATTCCACGAATTGTGAGGATGTGAAAGTAATGCCAAGCACACCACAGGTCTCAAATTCCTCGACATCTCTTTTACTACAAATGGGAATGAGCTGTCATGTCACTAAGATTCTTAGAGAAAACATTTTACAGGTTCTCTCTCTGTCTCTCTCTCTCTACATCTATAGTACATATGTGTGA 5679 0.3825 MSSSINIDSALSFLESYIDDDSENFNGDDLASQLEKYPLEKYPSIEIDWDSISNPDPIRRTYDVFLSFRGEDTRASFTSHLFASLQNDGITVFRDDDSLPRGDHISTSLLRAIEESQISVIVFSTNYANSRWCLRELEKIMECHRTIGQVVLPVFYDVDPSEVRHQTGEFGKAFQDLIRECERNWLSLKTPSESWTVERWRMALSEAGGIAGFVVLNSRNESEAIKDIVENITRLLDKTDLFIADNPVGVESRVEDMIQLIDNKQSNDVVLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREVWEQDAGQVYLQEQLLFDIFKKRTIKIHSTESGKNILKEKLCHKRVLIVLDDVNKLDQLNALCGSREWFGSGSRIIITTRDMHMLRGNRVDQIYIMKEMDESESIELFNWHAFKQASPRGDFVGISRNVVEYSGGLPLALEVLGSYLFDRGITEWECVLEKLKRIPNDQVQKKLKISYDGLDDDTEKEIFLDIACFFIGMDRNDVIHILNGCGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKKLQKRSRLWFQEDVLDVLSEKTGTDAVEGLALKLPRTDKQPLSTKAFKNMKTLRLLQFAGVQLDGDFKYLSRNLRWLCWNGFPLTCIPTNFCQGSLVSIELENSNVKFVWEKSQRLEKLKILNLSHSHHLTQTPDFSNLPNLEKLVLTDCRSLSEISHTIGHLNKVLLINLKGCVSLCSLPRSIYKLKSLKTLILSGCLMIDKLEEDLEQMKSLTTLIADNTAITRVPFSLVRSKSIGYISLCGHEGLSRDVFPSIIWSWMSPTNYLSSLIQTPVSMSSLVSLDVPNSSSHELSSIFKDLPKLRSLWVEFGSELQLSRDAATILDALYATNCKELESTATTSQASNIETSGLLECSKNSLKSLLIQMGMNCQVTNILKESITQSMTISGCEVGLLPGDNYPNWLTFDCEDSSVIFEVPQVNGRNLKTMMCIVHYSTPDDIASDGLKNSRIFDVFLSFRGEDSRASFISHLYSSLQNAGLYVFKDDDEIQRGDQISVSLLRAIRRSRISIIVLSKNYGNSRWCLQELENIMESRRTMGLVVVPVFYGVDPSDVRQQTGEFGEGFQNLIKGISVETTVRNWRIALLEVGGIAGVVVLNSRNESDDIKKVVEQVTGLLDKTDLFVAEHPVGLEDRVERVIQLMSKNQLLGVSGMGGLGKSTIAKAVYNRVRHNFEAKCFLLNIREACEQNNGNIVSLQQKLLSDIYKTTKINIDTVESGKTELRKRLSQKTIFLVLDDVNEEEQLDALCGSRTWFSHESRIIITTRDDDLLSKLGVDYIYKMKEMKKNESLELFSWHAFKQPSPREGFAELSRDVVEYCEGLPLALQVIGSFLRTRGEKVWKSVLEKLKIIPHKKVQKKLRINFDGLGDDKVQEIFLDIAFFFIGMDRDEVIEILNECGHFAEIGIDILVQQSLVTVDNKNKLGMHSLLRDMGREIVREKSPEEVEKRNRLWFYEDTLKVLSKNTRMTDVHGLSLKSQCVNTTTYYLETKAFEKMDKLRLLQLAGVQLDGNYKYLSTELRWLCWHGFPLKYTPANFYQESLVAIDLKYSNLERVWKRSQLLKKLKFLNLSHSPKLTQTPNFSNLPNLKKLILKDCTSLSSISHTIGNLNELLLINLKNCTSLRELPKSIYKLKSLKTLILSGCTKIDKLEEDIEQMESLTTLVADNTAITRVPFAIVRSKSVGYISLCGYEGFSRNVFPSIIRSWVSPTNNILSRFQTSSAGTSSLDLLDEQNSTFYGVSRKDLQKLQRLWVKCESEVQLNQNVERILDSLDSTNCEDVKVMPSTPQVSNSSTSLLLQMGMSCHVTKILRENILQVLSLSLSLYIYSTYV. 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10727 1892 SUPERFAMILY L domain-like 1487 1812 - -
Seca4g10727 1892 Gene3D - 1011 1184 IPR035897 -
Seca4g10727 1892 Gene3D - 58 241 IPR035897 -
Seca4g10727 1892 Gene3D Ribonuclease Inhibitor 1505 1686 IPR032675 -
Seca4g10727 1892 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 213 IPR035897 -
Seca4g10727 1892 Pfam NB-ARC domain 251 486 IPR002182 GO:0043531
Seca4g10727 1892 Pfam NB-ARC domain 1195 1416 IPR002182 GO:0043531
Seca4g10727 1892 PRINTS Disease resistance protein signature 441 455 - -
Seca4g10727 1892 PRINTS Disease resistance protein signature 679 695 - -
Seca4g10727 1892 PRINTS Disease resistance protein signature 271 286 - -
Seca4g10727 1892 PRINTS Disease resistance protein signature 348 362 - -
Seca4g10727 1892 SUPERFAMILY Toll/Interleukin receptor TIR domain 1008 1156 IPR035897 -
Seca4g10727 1892 ProSiteProfiles TIR domain profile. 1014 1180 IPR000157 GO:0007165
Seca4g10727 1892 Gene3D - 1346 1430 IPR042197 -
Seca4g10727 1892 Gene3D - 406 490 IPR042197 -
Seca4g10727 1892 Gene3D - 242 401 IPR027417 -
Seca4g10727 1892 Gene3D - 1185 1340 IPR027417 -
Seca4g10727 1892 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 62 919 IPR044974 GO:0006952
Seca4g10727 1892 Gene3D Ribonuclease Inhibitor 1687 1861 IPR032675 -
Seca4g10727 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 501 IPR027417 -
Seca4g10727 1892 Gene3D Ribonuclease Inhibitor 596 957 IPR032675 -
Seca4g10727 1892 ProSiteProfiles TIR domain profile. 60 208 IPR000157 GO:0007165
Seca4g10727 1892 SMART till_3 1015 1154 IPR000157 GO:0007165
Seca4g10727 1892 SMART till_3 61 210 IPR000157 GO:0007165
Seca4g10727 1892 SMART AAA_5 268 408 IPR003593 GO:0016887
Seca4g10727 1892 SMART AAA_5 1207 1348 IPR003593 GO:0016887
Seca4g10727 1892 Pfam TIR domain 1016 1176 IPR000157 GO:0007165
Seca4g10727 1892 Pfam TIR domain 62 235 IPR000157 GO:0007165
Seca4g10727 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1183 1441 IPR027417 -
Seca4g10727 1892 FunFam Disease resistance protein (TIR-NBS-LRR class) 1012 1182 - -
Seca4g10727 1892 SUPERFAMILY L domain-like 547 875 - -
Seca4g10727 1892 FunFam Disease resistance protein (TIR-NBS-LRR class) 58 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10727 Seca-Chr4 244112058 244135722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10727 53 796 WRKY Transcription Factor Family AT4G12020 31.339 4.01e-84 305