Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10687 ATGGAACCGGAAGAACCCACACCCATGGCCACCGCCATCGTTGCAGTCGACCCCGACGGAAGCGGCGACGAGGGGTTGCTGACGCCAGGCGAAGGTGGTGGAGGCAAAGGCAACAGCAGAGACAGAGTAAAGGGTCCTTGGTCTCCGGAAGAGGACGCCATTCTGAGTCGCCTTGTAAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCTCGCGGGATCGCCGGAAGATCCGGCAAGTCCTGCAGGCTCCGGTGGTGCAATCAGCTCGATCCTTCCGTGAAGCGCAAGCCCTTCACTGCGGTTGATGTTTGGCAAGCTGACTTTCGTGTCGTTGACTTGAACACTCTAGGAGCCCCTGTGAAGTTTCCCTGGGTCAAATCTGGCATCTTCTTCCTCCAGAACCAAAACCAGTGCATTGCTGACCCTTCATGCTAA 438 0.5753 MEPEEPTPMATAIVAVDPDGSGDEGLLTPGEGGGGKGNSRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTAVDVWQADFRVVDLNTLGAPVKFPWVKSGIFFLQNQNQCIADPSC. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10687 145 FunFam MYB transcription factor 44 95 - -
Seca4g10687 145 MobiDBLite consensus disorder prediction 1 47 - -
Seca4g10687 145 Pfam Myb-like DNA-binding domain 47 101 - -
Seca4g10687 145 SMART sant 43 92 IPR001005 -
Seca4g10687 145 Gene3D - 43 95 - -
Seca4g10687 145 PANTHER MYB PROTEIN-RELATED 44 101 - -
Seca4g10687 145 CDD SANT 46 88 IPR001005 -
Seca4g10687 145 ProSiteProfiles Myb-like domain profile. 39 90 IPR001005 -
Seca4g10687 145 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 94 IPR017930 -
Seca4g10687 145 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10687 Seca-Chr4 243710937 243713080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10687 40 100 MYB Transcription Factor Family AT3G55730 78.689 2.23e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g10687 Myb_DNA-bind_6 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10687 K09422 - pvu:PHAVU_010G075600g 140.969