Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10686 ATGACTTTTCTGCAATCTGCAGCTAAAAAAGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGTAACAAATGGGCAGCCATAGCCAGGTGTCTACCTGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAGTTAGAATCTGGTAATACAGTGGAAGATTTTAGCTTGGACAAAGCCAAAGCATCATCGGAAGACACACTATCATGTGATGTTAATTCCTTGAAATCCTCAGAAGGAAGAGATGTCAGTTCTATGGAAATCATGGATGATAAATATAAAGACAAAGCTCAGACTGAGGGTCAATTAAACCATGAAGTCAAGGATCTGCCTACCCTTTTTCGGCCAGTAGCACGTGTAAGTGCTTTTAGTGCATATCAGTCTTTCAATGGTTCACAGCCTTCAACATCAATTCCAAGACCTGTTCCAATACAAGGGCCCATTTTTCAATCATCAAAACCAGATCTTGAATTTTATAAAATGTTCGAAGGAATTTATGGTGACCAGTCAGTGCCTCACCAGTGTGGCCATGGATGCTGTGCTGCTCCAAATGGTCAAATCTCTGAAAGCTCTTTGTTGGGACCAGAATTCATCGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTAGAGAATAGTAGCGTCAAAATGATGGGTGACACAGCTGGCAGGGTGATGTCTAAAGGATCTCATGTACATATTGGCCATTAG 813 0.417 MTFLQSAAKKEEDRIIVAAHAIHGNKWAAIARCLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNTVEDFSLDKAKASSEDTLSCDVNSLKSSEGRDVSSMEIMDDKYKDKAQTEGQLNHEVKDLPTLFRPVARVSAFSAYQSFNGSQPSTSIPRPVPIQGPIFQSSKPDLEFYKMFEGIYGDQSVPHQCGHGCCAAPNGQISESSLLGPEFIEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGRVMSKGSHVHIGH. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10686 270 CDD SANT 10 50 IPR001005 -
Seca4g10686 270 SMART sant 4 52 IPR001005 -
Seca4g10686 270 SUPERFAMILY Homeodomain-like 10 52 IPR009057 -
Seca4g10686 270 Gene3D - 9 53 - -
Seca4g10686 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Seca4g10686 270 ProSiteProfiles Myb-like domain profile. 10 50 IPR001005 -
Seca4g10686 270 PANTHER MYB PROTEIN-RELATED 9 104 - -
Seca4g10686 270 Pfam Myb-like DNA-binding domain 10 49 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10686 Seca-Chr4 243708049 243709107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10686 3 270 MYB Transcription Factor Family AT3G09230 46.953 1.00e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g10686 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10686 K09422 - gmx:100813406 426.787