Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10683 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCATTTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGAGTGAAAGAACCTGGCCCAGTTTTGGTGAGTTCAGCTTGGAGCAACTGAAGGCTGCCACAAATGGGTTCTCCTCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTTCAAAGGGAAACTTGAGAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTCGCTTGGCCTGATTCTCGCCAATTCCTTGAAGAAGCCAAACAAGTGGGGAGCCTTAGAAGTGAACGTTTGGCAAATTTGATTGGTTGTTGCTATGAAGGGGAGGAGAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTTGCTAAGCACCTCTTTCATTGGGAGGCACAGCCTATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACCAGTAAAGGCAGGGGTTTGTATCATGATCTCAATGCTTACAGGATCTTGTTTGATCAGGATGGTAATCCAAGGTTGTCTTGCTTTGGGCTTATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAATTTGGCTTTCACTCCTCCTGAGTACTTAAGGACTGGTAGAGTGACAGCAGAGAGTGTGGTTTACAGTTTTGGGACCTTGTTGCTGGATCTCTTAAGTGGTAAACACATTCCCCCAAGCCATGCACTAGACCTGATACGTGGCAAAAACTTCTTGATGCTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAAGATGATGGAACTGAGTTAGTTCGTTTGGCTTCCCGTTGCTTACAGTATGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTGCATCTCTTATGTCACTTCAGAAAGAAACAGAGCTCATTTGGATAGTATGTGAGCAGGTCCCTTCATATGTTCTGATGGGTCTCCGGCTTGAAACTGCATCCTCAACAAAGGCATTGTCATTAACACCATTTGGTGAAGCTTGTTTGAGATTGGATCTTACTGCCATACATGAAATATTAGAGAAGATTGGTTACAAGGATGATGAAGGAATTGCTAATGAGCTTTCCTTTCAACTGTGGACTAGTCAAATGCAGGAGACCTTGAATTTGAAGAAACATGGAGATACTGCTTTTAGAGCTAAGGACTTTGTCACTGCCATTGACTGCTACACACAATTCATAGATGGAGGGACCATGGTGTCACCAACAGTGTATACAAGGAGATGCTTAGCTTATTTGATGAATGACATGCCACAGGAAGCATTAGGGGATGCTATGCAAGCCCAAGTGGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAACTTGTCTTTTCAGTCTTGGAATGGAAAATGATGCACAAGAGACTCTCAAAGATGGGACTAACATGGAAGCCAAAAGAAACAAAAATTGA 1497 0.4382 MGARCSKFSFCWFHSHFKPSVLESSDQENGGKSERTWPSFGEFSLEQLKAATNGFSSENIVSEHGEKAPNVVFKGKLENGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGCCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLMSLQKETELIWIVCEQVPSYVLMGLRLETASSTKALSLTPFGEACLRLDLTAIHEILEKIGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYTRRCLAYLMNDMPQEALGDAMQAQVVSPEWPTALYLQATCLFSLGMENDAQETLKDGTNMEAKRNKN. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10683 498 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Seca4g10683 498 FunFam probable serine/threonine-protein kinase At5g41260 135 334 - -
Seca4g10683 498 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Seca4g10683 498 SUPERFAMILY Protein kinase-like (PK-like) 33 320 IPR011009 -
Seca4g10683 498 FunFam probable serine/threonine-protein kinase At4g35230 391 498 - -
Seca4g10683 498 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Seca4g10683 498 Gene3D Transferase(Phosphotransferase) domain 1 135 322 - -
Seca4g10683 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 497 IPR045845 GO:0004672|GO:0009742
Seca4g10683 498 Gene3D Tetratricopeptide repeat domain 390 498 IPR011990 GO:0005515
Seca4g10683 498 ProSiteProfiles Protein kinase domain profile. 58 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10683 498 SUPERFAMILY TPR-like 394 487 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10683 Seca-Chr4 243692690 243696846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10683 43 309 Glycoside Hydrolase AT3G07070 34.237 7.65e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca4g10683 PK_Tyr_Ser-Thr 5.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10683 - - gmx:100814477 940.643