Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10629 ATGGCTGAGGGTTTTGAGGGTTACCATGTCCCACAACAAAGCAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCACAACGTTGGACCTTCACCTTTATACCAAGACCCTTCTTCCTTTCTTTCCTCTGATTTCTTAACGTTTTCCAAACAAAACTTTCCTTCTTCTCTCAAGGAACAAGCTTCCTCCAATTTCATGATGCGCTTCATGAACAACGCTTCTTCTTCGAATAATAATAATAATAATAATAATAATTCTTCAGTTTCTCATCACCATGCTCCTTACTTGGACCCTCAATCGTCTTTACCTCTGAACCCAAGTACAATTCAAGTCATTAGCAGCAGCAACAACAACAACCCTTTTCTCTATAATGTTCAGAACCTTCGGGAGTTTGATCAGAGCTGCTATAATAGTAATAATAATAATGGGAATGGGAGTGAAATGAATGCTATGGTGTTCAAGCATGAGCCTTTATCTTTGTCTCTGTCATCACATAACAACAGTGCACATCATCACCCTCTGGAGCTGAATCTTCAGAGATATGGGTCTGTGATTTATGGTGGTGATAAGGGTGGGTGGGTGATTCCGGGGTTGGTTGGAGGAGTTAGTGGTTCAGGGCCATTTACTGGTTATGCTTCTGTGCTGAAAGATTCGAGATTCTTGAAGCCTGCACAGCAATTGTTGGAAGAGATATGTGATGTTGGGGGTCGTGCTGAGAAGGGGGTGATGGTGGTGGCTGATGCATCCTTCATGGACCCTCCTCCTCCGGAGAGCTTCACTGAAGATCCACTTGCTGCTGGTGATGGTCGCAAGAAGTCAAGGCTTTTGACTATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAAATGCAGGCGGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCTTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTCAGATGCTTAAAAAATGCAATTACTGACCAGCTTCAGTTCACCAATAAGGCTCATTTTCACATAAGCAACAGTAAAGAAGGATCTCCAAGGTTTGGAAACAGTGATAGAGGCCCTTACAGCCAAAGATCAGGGTTTCTTGAGCATCAACCTGTTTGGCGACCTCAAAGGGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACAGACAAGCTAATGTTGGCTAAACAAACAGGTCTGTCTCGAAGTCAGGTGTCTAATTGGTTCATCAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTTGAAACGCGACAAGCTCAAAAGAATTCACAGAAGGAAGAACATTGTAGGAACAAACCAAGTGAGAATTTGCCTTCAGACAACTCTCTTGTTTCTGAGAATCCATCTACCTCCACAGATAAATATCAGGATGCTCCTTACAAGCGCACTATAAATGAAATTCCTAATATAGCAGTGAGGAGTCAAGAACAACTGAATCTGCCCTGCACAGGCAACCAGCCAGTAGGTGTTGGAGTGAACATTGGGAGTGGAAGCAATAATAGTGTGTCACTGACACTAGGTCTTCATCAAAATCATGGGATTGGTTTAGCTGAACCTTTTCCTTTGAGTGCAGCTCAGCGTTTTGGTCTAGGTCTTGAAACCAATAATGAAGGCTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGAGGTTATTGGAGGCCAAATATTGCATGACTTTGTAGGCTGA 1788 0.429 MAEGFEGYHVPQQSRRDKLRVVVAHNVGPSPLYQDPSSFLSSDFLTFSKQNFPSSLKEQASSNFMMRFMNNASSSNNNNNNNNNSSVSHHHAPYLDPQSSLPLNPSTIQVISSSNNNNPFLYNVQNLREFDQSCYNSNNNNGNGSEMNAMVFKHEPLSLSLSSHNNSAHHHPLELNLQRYGSVIYGGDKGGWVIPGLVGGVSGSGPFTGYASVLKDSRFLKPAQQLLEEICDVGGRAEKGVMVVADASFMDPPPPESFTEDPLAAGDGRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFTNKAHFHISNSKEGSPRFGNSDRGPYSQRSGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKEEHCRNKPSENLPSDNSLVSENPSTSTDKYQDAPYKRTINEIPNIAVRSQEQLNLPCTGNQPVGVGVNIGSGSNNSVSLTLGLHQNHGIGLAEPFPLSAAQRFGLGLETNNEGYVMSGFESQNRHFGREVIGGQILHDFVG. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10629 595 MobiDBLite consensus disorder prediction 70 99 - -
Seca4g10629 595 SUPERFAMILY Homeodomain-like 377 442 IPR009057 -
Seca4g10629 595 FunFam BEL1-like homeodomain protein 9 378 440 - -
Seca4g10629 595 CDD homeodomain 375 436 IPR001356 GO:0003677
Seca4g10629 595 MobiDBLite consensus disorder prediction 464 485 - -
Seca4g10629 595 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Seca4g10629 595 SMART HOX_1 375 439 IPR001356 GO:0003677
Seca4g10629 595 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 456 - -
Seca4g10629 595 MobiDBLite consensus disorder prediction 446 485 - -
Seca4g10629 595 SMART prehox3 208 332 IPR006563 -
Seca4g10629 595 MobiDBLite consensus disorder prediction 446 463 - -
Seca4g10629 595 Pfam Associated with HOX 213 331 IPR006563 -
Seca4g10629 595 Gene3D - 378 440 - -
Seca4g10629 595 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10629 Seca-Chr4 242818897 242825164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10629 141 595 Homeobox Transcription Factor Family AT5G02030 48.861 6.99e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g10629 POX 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10629 - - gmx:100805512 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10629 4 242818897 242825164 Seca4g10629 4 242818897 242825164 ECH