LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g10625	ATGTCTCAGCCGACGGGGCGGAGCAGCAGCAGGGTGGTGGGAGACTACGTGGTGGGGAAGCAAATCGGCTCGGGGTCATTCTCGGTGGTGTGGCATGGGAGGCACAAGGTGCATGGAACCGAGGTGGCGATAAAGGAGATCGCAACGCTTCGACTCAATAAGAAGTTGCAGGAGAGCCTCATGTCTGAGATTTTCATCTTGAAGCGGATTAACCATCCTAATATCATCAGTTTGCACGATATCATTCAGGCTCCTGGGAAGATACATCTTGTGCTAGAGTACTGTAAAGGGGGAGATCTCTCTTTGTACATTCAGCGTCATGGAAGGGTACCAGAGGCAACTGCAAAGCATTTTATGCGGCAGCTGGCTGCTGGCCTACAAGTTCTTCGGGACAATAACCTTATTCATCGAGACCTGAAACCACAGAATCTTCTTCTCTCCAGAAATGATGAGAAGTCAGTGCTGAAGATCGCTGACTTTGGATTTGCAAGATCTCTGCAACCCAGGGGCCTTGCAGAAACCTTGTGTGGTTCACCACTGTACATGGCTCCAGAAATCATGCAACTACAGAAATATGATGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTTGTTACAGGAAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATTATGAAATCAACAGAATTGCAATTTCCACCTGATAACCAAAGTTTGAGTTCTGATTGCAAAGATTTGTGTCAGAAATTGCTACGCCGGAATCCAGTGGAACGTTTAACTTTTGAAGAATTCTTTAATCATCCATTCCTTTCCCAGAAGCAAACAGAACTGGATGAACCATTGAGGAATAGAAGTTCTTCAAGGCTGGTAGGTGGGTTTTGTTCAACAGTGTCCGACCCTTTGAGAAGAACTGAGGAAAATTATCAAGAGGATTGCTTACCTTTCATTCTGGATGACGATTCTAGTGGCCCCGAAGGGAGTCCATCCTTTTCAAGGAAGAAGTCCTCAATGAAGTCTACCTATGGATTTGATCTAAATACAAAATTAGATAAAGTAGAGTCAGTATCTCCTATTTCTAATAACTTAAGTTCTGCTTCCAGATATGGTAGTGTGGCACAGAGACCTGAAACCACTACTAAAAGATTGGACAGCCATAAAAATTTGGGACGAAATATCACTGATCCTCTAGAATCTCCAGATCAGATATTTGCAAACCCTTATCCGAAAGTTACGGATTCACTAGAGAATATTGATCAAGATTATGTTCTTGTGTCTGGGCCCCCTATGGATATTTCATCTTCTTCAGTGAATGCTTCAAAACCCATCCATTCCCTATATAGGTCAGGTAGTTTCCCCCAAGAGTCTTCTAATACAATCACTAGATTAAGTGCTCCAATGCCAATCATTGGTGTACCTACCAATAGCATATGCCAAATTGGAAGTTCAGGTAGTCAGGACTCTCCTCCTGGGACTTCTCATGGATCAATGGATACAGGTGATGAACAGCCATCAGCTCACTGCATGACAAGGGTGAAATCATTGCAACAGTGTGCATCTGCCATCAAGGAATTAGTTAATGAAAAGATGGAGGCAGGAAAGCAGCTAGAAGCATTTTCTATTCAGCTTGTAATTCTCGCCGTTTGGAAGCAAGCATTGCACATATGCCATACACAGGCTGCCTCTGCCATGGAAGGAAGTCCAAATCAAGAAGCCTCAAGATATAAGAGGAGCATCAGCAAGAAGCATGGCAGTCCTGATTCAGAAGAATGCCTTGATGGGAAAACCCAAGGGCCAAAAGATATATTATTGCAAATTGAAAGTGAATTTTTGAAGGAATTTGAGAATGCTGAAGAACTTGCGAAGACCATTCAGCCTGGAAATACAGAGATGCCGGATGCAATGGAGACAATATTCCAAGCTGCCCTTGCTTTTGGGAGACATGGGGGTGTGAGTATTTTCCGCCTCTCATTTCTTCCATTTTGGTCAGGGTTTTAA	2004	0.4341	MSQPTGRSSSRVVGDYVVGKQIGSGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIISLHDIIQAPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMRQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNIMKSTELQFPPDNQSLSSDCKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQTELDEPLRNRSSSRLVGGFCSTVSDPLRRTEENYQEDCLPFILDDDSSGPEGSPSFSRKKSSMKSTYGFDLNTKLDKVESVSPISNNLSSASRYGSVAQRPETTTKRLDSHKNLGRNITDPLESPDQIFANPYPKVTDSLENIDQDYVLVSGPPMDISSSSVNASKPIHSLYRSGSFPQESSNTITRLSAPMPIIGVPTNSICQIGSSGSQDSPPGTSHGSMDTGDEQPSAHCMTRVKSLQQCASAIKELVNEKMEAGKQLEAFSIQLVILAVWKQALHICHTQAASAMEGSPNQEASRYKRSISKKHGSPDSEECLDGKTQGPKDILLQIESEFLKEFENAEELAKTIQPGNTEMPDAMETIFQAALAFGRHGGVSIFRLSFLPFWSGF.	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g10625	667	CDD	STKc_ATG1_ULK_like	22	272	-	-
	Seca4g10625	667	Pfam	Protein kinase domain	16	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10625	667	Gene3D	Transferase(Phosphotransferase) domain 1	6	314	-	-
	Seca4g10625	667	MobiDBLite	consensus disorder prediction	478	502	-	-
	Seca4g10625	667	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
	Seca4g10625	667	MobiDBLite	consensus disorder prediction	563	598	-	-
	Seca4g10625	667	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	6	644	IPR045269	GO:0004674\|GO:0006914
	Seca4g10625	667	FunFam	Non-specific serine/threonine protein kinase	2	96	-	-
	Seca4g10625	667	ProSiteProfiles	Protein kinase domain profile.	16	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10625	667	MobiDBLite	consensus disorder prediction	478	508	-	-
	Seca4g10625	667	Coils	Coil	524	544	-	-
	Seca4g10625	667	SMART	serkin_6	16	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10625	667	SUPERFAMILY	Protein kinase-like (PK-like)	12	472	IPR011009	-
	Seca4g10625	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	134	146	IPR008271	GO:0004672\|GO:0006468
	Seca4g10625	667	FunFam	Serine/threonine-protein kinase ATG1	8	314	-	-
	Seca4g10625	667	MobiDBLite	consensus disorder prediction	319	339	-	-
	Seca4g10625	667	MobiDBLite	consensus disorder prediction	577	598	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g10625	Seca-Chr4	242742656	242750038	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g10625	1	273	CBL-interacting serine-threonine protein kinases	AT2G30360	36.559	2.79e-55	193

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Seca4g10625		Pkinase	2.4e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g10625	K08269		-	gmx:100791596	1149.04