Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10615 ATGGCCAACCTGCTCCAAATCTTACCTGTGTTGCTGTTCCTTCTGATCCCAGTTTCATCTCAACCTGACCAGCTTCTGTATGCTGGATTCAAGGGTATAGGCACTGACAACTTAACCTTAAATGGGGTAGCAGAAATAGAGAAAAGTGGAATACTGAAGCTTACAAATGAGACCAGTAGATTAATGGGTCATGCTTTTTATCCTTTACCTTTTCAGTTCAAGAACTCAAGCAATGGAAAAGCTTTCTCCTTTTCTTCTTCTTTTGCTTTGGCTATTGTCCCTGAGTATCCAAAGCTAGGTGGACATGGCTTGGCTTTTACCATTGCAACTTCCAAGGATCTCAATGCTCTTCCCAGTCAGTACCTTGGTCTCCTTAACAAAAGTAACATTGGGAACTTCTCCAACCACCTCTTTGCTGTTGAGTTTGACACTGTCCAAGACTTTGAGTTTGGGGACATCAATGACAACCATGTTGGAATTGACATCAACAACTTGGAATCCAATGCTTCTACCACAGCAGGGTACTACACTGATGATTCAACCAAAAAAGATCTCAATCTCAAAAGTGGGAAACCTATTCTAGCTTGGGTTGATTATGATTCTGCTGAAAATGTTATCAATGTCACACTTTCTGCATCTTCTTCCAAGCCTAAAAATCCAATCTTGTCCTATTCCCTTGATCTCTCACCAATCCTTAAGGAATCCATGTATGTTGGATTCTCTGCATCAACAGGCTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGACCAGCTCCACCCCTTGATCTCTCTTCTCTCCCACAGCTTCCAGGGCTAAAGAAGAAACACACATCTCTTATTATTGGGGTTTCAGTATCTGTTATTGTAATTGCATTGTTTGCTGTCTTACTTGGGATTTATCTATACAGAAAAAACAAGAATGCTGATGTGGTAGAAGATTGGGAGCTTGAGATTGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAAGCCACAAAAGGTTTCAAGGACAAAGAGCTACTTGGACAAGGTGGGTTTGGTAGAGTTTACAAAGGAACATTACCAAATTCCAAGACCCAAGTAGCTGTTAAGAGAATTTCACATGATTCCAAACAAGGCCTAAGGGAATTTGTATCAGAAATAGCCAGCATAGGGAGGCTTCGCCACCGGAATTTGGTTCAATTGCTGGGGTGGTGTCGCCTCCGTGGTGATCTCCTTCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACTTGTTTGATGAGCCAAAAACTATACTAAGTTGGGAACAGAGGTTTAAGATCATAAAGGATGTTGCTTCAGCCCTTTTGTATTTGCATGAAGAGTATGAGCAAGTGGTGATACATAGGGATGTGAAGGCTAGCAATGTGCTTTTAGATAGTGAACTCAATGGAAGACTAGGAGATTTTGGGTTAGCAAGATTGTATGAACATGGGGCTAATCCAAGTACTACAAGAGTGGTGGGTACCTTAGGCTATTTGGCACCTGAGTTGACTAGAACTGGGAAGGCCACTCCTAACACAGATGTTTTTGCATTTGGTGCACTTTTACTTGAAGTGGCATGTGGGCTTAGACCCTTTGAGCCAAAGGCATCACAAGAAGATTCAATTTTGGTAGATTGGGTGTGGAACAGATACAGAGAAGGGAGAATACTTGATGTGGTGGACCCAAAACTAAATGGTGTTTTTAATGAAGGAGAGGTGCTTATGGTGTTGAAATTGGGGCTTTTGTGTTCAAATGGTGCACCCACTGGTAGGCCTAACATGAGGCAAGTAGTGAGGTTTTTGGATGGAGAAGTTGGTTTGCCAGATGAGTTGAGGAAGTCAGGAGAGATAGATCATCACCACATGGAGGGTTTTGATGAATTCTTGCACTCATTTGAACCTTCTTCATTTGATAAGATGAGCACAAGTTCCTATATTAACAATAGGGACATGAATGCTAGTTTTCCTTCTTTTACTAATTCACCTCTTTTTACTCTGCATGGTAGAGGAGAAACTAGATGA 2052 0.4176 MANLLQILPVLLFLLIPVSSQPDQLLYAGFKGIGTDNLTLNGVAEIEKSGILKLTNETSRLMGHAFYPLPFQFKNSSNGKAFSFSSSFALAIVPEYPKLGGHGLAFTIATSKDLNALPSQYLGLLNKSNIGNFSNHLFAVEFDTVQDFEFGDINDNHVGIDINNLESNASTTAGYYTDDSTKKDLNLKSGKPILAWVDYDSAENVINVTLSASSSKPKNPILSYSLDLSPILKESMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPGLKKKHTSLIIGVSVSVIVIALFAVLLGIYLYRKNKNADVVEDWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGRVYKGTLPNSKTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRLRGDLLLVYDFMANGSLDKYLFDEPKTILSWEQRFKIIKDVASALLYLHEEYEQVVIHRDVKASNVLLDSELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELTRTGKATPNTDVFAFGALLLEVACGLRPFEPKASQEDSILVDWVWNRYREGRILDVVDPKLNGVFNEGEVLMVLKLGLLCSNGAPTGRPNMRQVVRFLDGEVGLPDELRKSGEIDHHHMEGFDEFLHSFEPSSFDKMSTSSYINNRDMNASFPSFTNSPLFTLHGRGETR. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10615 683 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Seca4g10615 683 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10615 683 FunFam L-type lectin-domain containing receptor kinase S.4 21 266 - -
Seca4g10615 683 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Seca4g10615 683 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Seca4g10615 683 Gene3D - 26 268 - -
Seca4g10615 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 280 IPR013320 -
Seca4g10615 683 CDD STKc_IRAK 347 613 - -
Seca4g10615 683 Pfam Protein kinase domain 341 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10615 683 FunFam L-type lectin-domain containing receptor kinase S.4 418 624 - -
Seca4g10615 683 PANTHER - 41 618 - -
Seca4g10615 683 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Seca4g10615 683 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Seca4g10615 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Seca4g10615 683 CDD lectin_legume_LecRK_Arcelin_ConA 27 262 IPR001220 GO:0030246
Seca4g10615 683 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10615 683 Pfam Legume lectin domain 26 272 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10615 Seca-Chr4 242609849 242611900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10615 18 637 Receptor kinase-like Gene Family AT3G55550 62.261 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca4g10615 Lectin_legB 3.4e-76 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10615 - - gmx:100801247 1091.26