Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10606 ATGGAATTTAATTCCCAAAATTCTCAGAAATCTGAGCATGTAAGATTGATTTGTGATGATCAAGGTGGTCATGGACAAAATAGATCTTATACTTGTGCTTTTTGCAAGAGAGTGTTCTCAAATGCACAGGCACTTGGAGGTCACATGACTACACATAGAAGAGACAGAGCCAAGCTTAGGCAATCTTATGAAGAAAATTTGCTTTCTTTGGACATATCAATCAAGAGCACCACTTATCACGATGAGCCTCAGCCTTTGGAAGAGAATTTTTCGTTTCGATTGGATTATGGTAATCAACAGAAAGATACCAGCAATTGTAAAAAGCCATGCACTTTTTCTGACAAGGATGATCAAAGGGAATTTCTTCAGCTTCCTTTATTTGTCGGGATGCCATGTTCAAGCAATGAGATAAAGGGAGGTACAATTGTGGTTGAAAGGATTGAAGAGAAGAAAGCTGATTTAGACCTTGAACTTCGTTTAGGCCCTGAGCCGCGGGAGGAACCAACTTTGAGCACAAGAGAATTCTTTTGA 531 0.3936 MEFNSQNSQKSEHVRLICDDQGGHGQNRSYTCAFCKRVFSNAQALGGHMTTHRRDRAKLRQSYEENLLSLDISIKSTTYHDEPQPLEENFSFRLDYGNQQKDTSNCKKPCTFSDKDDQREFLQLPLFVGMPCSSNEIKGGTIVVERIEEKKADLDLELRLGPEPREEPTLSTREFF. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10606 176 Gene3D Classic Zinc Finger 4 84 - -
Seca4g10606 176 PANTHER OS07G0101800 PROTEIN 1 164 - -
Seca4g10606 176 Pfam C2H2-type zinc finger 30 54 - -
Seca4g10606 176 SUPERFAMILY beta-beta-alpha zinc fingers 27 56 IPR036236 -
Seca4g10606 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Seca4g10606 176 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10606 Seca-Chr4 242495716 242496267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10606 26 66 C2H2 Transcription Factor Family AT3G09290 73.171 1.01e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g10606 zf-C2H2_6 5.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10606 - - ccaj:109793777 171.4