Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10605 ATGGAACAGGGTCAATGTTGGATGCAGACAAAGAGGAAGTACTTATCTATGAGCTCCAATCTTGCTTCACCAATAACTAATAACAACCCTTCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTGGCTCTCTTGTTGGTGGCTGCATATGGCCACCAAGATCATACTCTTGCAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAAGCACTAGGTGGCCATATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAACAACCATCTAGTCCCCACAACAATAATGAAATCCTATATCATGACCTTGAAACTCATCATCACCTCCACAATCCAGTTCAAACTCCTTTGAGTTACTTATACCCTTCTCCTGTTTGTGGATTGGCTTATAAAACTAACCCTAACTCTGATCCTGATTTTCTTGCCTCACCTTCATCTCCCTCACCTTCCAAGGCTTTATTAGCTCCATCACCTAATGGCAATACCAATAAGTTAAGAGAGGAAACCCTGATTCCACTTTATAATTCCTCTATTCTCCATAAGGTTTCCCCTGCAGTCAATTCTTCTGAATCATGGCCAAATTTGGCTGCAGATCACAGATTATATTCATGTAAGTTTAACCCTGAAGTTGATGTTGAGAAGGTCTCCAAGGGAATGGATTCTAGATGTAGAGGTAATGATGATAATGATGTGGCTATGAGCTTGAATTTGGTTGTGTGTAGAAGTCACTCATCTGTGAAGTTTGGGAGTTCTAAAGAAGCAGAAGATATCAATTCCAAGAAGAGGAAAACAGATGCTTCCTCAAATCTGTTTTTCCCAAAGTCAAGCTCTGTTGATAGACATGATCACAAGCAACCACAGAGGTTTGAATTTAGCCCTAGCTCCATTGAAGAGCTAGATCTGGAGTTGAGGCTTGGTAACAAGTCCAAGGTATAG 948 0.4103 MEQGQCWMQTKRKYLSMSSNLASPITNNNPSSYGDSWEEQAFAEDAAGSLVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQPSSPHNNNEILYHDLETHHHLHNPVQTPLSYLYPSPVCGLAYKTNPNSDPDFLASPSSPSPSKALLAPSPNGNTNKLREETLIPLYNSSILHKVSPAVNSSESWPNLAADHRLYSCKFNPEVDVEKVSKGMDSRCRGNDDNDVAMSLNLVVCRSHSSVKFGSSKEAEDINSKKRKTDASSNLFFPKSSSVDRHDHKQPQRFEFSPSSIEELDLELRLGNKSKV. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10605 315 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Seca4g10605 315 Pfam C2H2-type zinc finger 61 85 - -
Seca4g10605 315 Gene3D Classic Zinc Finger 58 111 - -
Seca4g10605 315 PANTHER OS07G0101800 PROTEIN 23 312 - -
Seca4g10605 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Seca4g10605 315 SMART c2h2final6 61 83 IPR013087 -
Seca4g10605 315 MobiDBLite consensus disorder prediction 141 167 - -
Seca4g10605 315 MobiDBLite consensus disorder prediction 261 297 - -
Seca4g10605 315 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10605 Seca-Chr4 242477077 242478024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10605 36 311 C2H2 Transcription Factor Family AT2G37740 32.381 1.21e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g10605 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10605 - - gmx:100801427 412.149