Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10592 ATGTTGAACCGTGGGTCAAATGTTTCGGCTGAAGCAGTTGGTGGTTCGGGTGAGAGTGAGGATGAGCTGTATGAGCAGCTATGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCATGTTGGACAGAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAACTAGAGGCGTCCACTAATCAGGAACTGAATCAGAGGATCCCTCTCTTGAAACTTCCCACAAAGATCCTCTGTCGCGTCGTGAACGTCCATTTACTGGCTGAACAAGAAACGGATGAGGTCTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGATGAGCCTACAAGCCCTGATCCGTGCACTGCTGAACTTCCGAGGCCAACAGTTCACTCATTCTGCAAGGTCTTAACTGCTTCAGATACCAGCACACATGGTGGTTTCTCTGTTCTCAGGAAACATGCCACAGAATGTCTTCCTGCTTTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACCTGCTCACAACTGGATGGAGTACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGAACAATGGGGAATTACGTGTGGGAGTGAGGCGTCTTGCTCGTCAGCCGAGTAGCATGCCATCGTCTGTGATCTCCAGTCAGAGCATGCACCTAGGAGTCCTTGCAACTGCCTCTCATGCCGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAAGTACTTGGAGGCTATAAACAATAAGTTCAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGCTGCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCCCATTGGGTGAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTCACAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGTCTTCTACTCCTACTCCCCCTGTTCAACCTACAGTTGTAAAGACGAAAAGGCCTCGACCACCCAGTGAAATTCCAGATGTTGACACAACATCGGCCACCTCAGTTTTCTGGGATTCTGGGCTAACTCAGGCTGATAGGACACAACTTAGTGTTTTATCTGAAAGCAAAAGAAGTGATAGTACTGGTATGTGGCATCATAAGCAAATTGATATGAATAGTAAAAGTAACAGCAACACTGTTATATCGAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCCTTCTCATGTATTTCCGGACACAACAGATGATAGCAAGAGTGTCTCAGCATGGCCTGTTTCAAAGCCTAACTCATCCAAACTGAACATCGATCATGTGCTTGATCAAGTTGACAAGGAGAACAAAGTTGAGTCTGGTACAAGTTATCGATTGTTTGGAATTGAGCTTATCGATCATTCCAGAAACTCACCTGCTGTTGAGAAGGCACCTTCACATGCAGTAAATGTACCCAGAGTTACCACTGAGGTCTGTGCAAGCACCTTGTCCAGAACTGATACTGGTCATAAGTCTGATGTCCCAAAGGCTTCTAAGGAGAGGAAACAAGAACAGCAGCAAATATCAACACAGGAGACTCAGAGCATGCAAATTTGTGGCAGAAGTCGCACCAAGGTTAAAATGCAGGGCGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGGTACAATCAACTTATAGATGAATTGGAGGAGATGTTTGACATAAAGGGACAACTTCGACACAGGAATATGTGGAAAATTGTCTTCACTGATAATGAAGGGGATGACATGCTTATGGGCGATCATCCATGGCTTGAATTTTGTAATGTGGTGAGAAAAATCTCCATTCTTTCCAGCCAGGATTTGAAGATGAGTTCAGGAAGCAAACCACCAATCTCTTCAATGGAAGAAGGGACTGTAATAAGCTCAGACACAACCGAAACCTGA 2082 0.4539 MLNRGSNVSAEAVGGSGESEDELYEQLWKACAGPLVDVPHVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTAELPRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLARQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAINNKFSVGMRFKMRFEGDAAAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVSSTPTPPVQPTVVKTKRPRPPSEIPDVDTTSATSVFWDSGLTQADRTQLSVLSESKRSDSTGMWHHKQIDMNSKSNSNTVISRNQTEGSWLSSPHSSCPSHVFPDTTDDSKSVSAWPVSKPNSSKLNIDHVLDQVDKENKVESGTSYRLFGIELIDHSRNSPAVEKAPSHAVNVPRVTTEVCASTLSRTDTGHKSDVPKASKERKQEQQQISTQETQSMQICGRSRTKVKMQGVAVGRAVDLTMLDGYNQLIDELEEMFDIKGQLRHRNMWKIVFTDNEGDDMLMGDHPWLEFCNVVRKISILSSQDLKMSSGSKPPISSMEEGTVISSDTTET. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10592 693 Gene3D - 580 670 - -
Seca4g10592 693 Gene3D - 289 363 - -
Seca4g10592 693 MobiDBLite consensus disorder prediction 542 577 - -
Seca4g10592 693 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g10592 693 CDD B3_DNA 126 228 IPR003340 GO:0003677
Seca4g10592 693 FunFam Auxin response factor 289 362 - -
Seca4g10592 693 FunFam Auxin response factor 126 230 - -
Seca4g10592 693 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Seca4g10592 693 MobiDBLite consensus disorder prediction 551 568 - -
Seca4g10592 693 Gene3D - 125 229 IPR015300 -
Seca4g10592 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g10592 693 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Seca4g10592 693 SMART B3_2 128 230 IPR003340 GO:0003677
Seca4g10592 693 SUPERFAMILY DNA-binding pseudobarrel domain 119 257 IPR015300 -
Seca4g10592 693 ProSiteProfiles PB1 domain profile. 583 664 IPR000270 GO:0005515
Seca4g10592 693 MobiDBLite consensus disorder prediction 356 388 - -
Seca4g10592 693 Pfam AUX/IAA family 563 667 IPR033389 -
Seca4g10592 693 MobiDBLite consensus disorder prediction 669 693 - -
Seca4g10592 693 SUPERFAMILY CAD & PB1 domains 580 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10592 Seca-Chr4 242256133 242261105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10592 23 674 B3 DNA Binding Superfamily AT4G23980 57.927 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g10592 AUX_IAA 2.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10592 K14486 - gmx:100779003 1138.25