Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10591 ATGTATCAATATCTCACGCAGAGGATAAGGACTTGTCTAGCCCAAAGATTTTTCTCAAACAAGTACAAAATAAATAGTGCATATTTGCATTCTTCATCTGCACTTGTGACAAACAAAATGTCAAGCACTGCTGGTCTTGTGATCCCATGCAATGCTGCTGTTGCATGGGAAGCAGGGAAACCTTTGGTGATAGAACGTGTGGAGGTGGCACCACCACAGGCTAAGGAAGTGAGGATCAAAGTCAAATATACCTCACTTTGCCACACTGATCTCTACTGGTGGGAAGCCAAGGAGCAAACTCCTCTGTTTCCCCGAATTTTAGGCCATGAGGCAGCTGGAATTGTGGAGAGTGTTGGAGAAGGTGTCACAGATCTGCAGGTTGGGGATCATGTGTTACCAGTATTCACTGGGGAATGTGGTGAGTGTGCACATTGCAAATCTGAGGAAAGTAACATGTGTGACCTGTTGCGAATAGATACAGACAGAGGAGTCATGCATAGCGATGGTAAAAGCAGATTCTCCATTAATGGTACCCCAATATACCACTTTGTTGGCACATCCACTTTTAGTGAATACACTGTGGTACATTCTGGTTCCCTAGCAAAGATCAATCCACTAGCACCTTTGGATAAAGTCTGTATCCTCAGTTGTGGCATCTCCACAGGGTTAGGAGCAACTTTAAATGTGGCAAAACCAAAGAAGGGCTCTACAGTAGCAGTATTTGGTCTTGGAGCTGTTGGCCTTGCTGCTGCTGAGGGTGCAAGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAATCCAAAGAGGTTTGAGGAAGCCAAAAAATTTGGGGTAACCGAGTTTGTGAATCCAAAGGACTATGATAAGCCAGTTCACGAGGTAATTGCAGATATGACAAATGGAGGTGTGGACCGAAGTTTAGAGTGCACTGGAAACATCAATGCCATGATATCTGCTTTTGAATGTGTTCATGATGGGTGGGGTGTTGCTGTGCTTGTTGGAGTACCCCATAAGGATGCAATTTTCATGACCAAGCCCATTAATATGCTCAATGAAAGAACACTGAAAGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGACCTCCCCTCTGTTGTTGATATGTACATGAACAAGACATTGGAACTGGACAAGTTCATAACCCATAGAGTTCCTTTCTCTGATATCAACAAGGCATTTGATTTAATGTTGAGAGGAGAGGGACTAAGGTGTATCATTAGCATGGATGACTAG 1260 0.4341 MYQYLTQRIRTCLAQRFFSNKYKINSAYLHSSSALVTNKMSSTAGLVIPCNAAVAWEAGKPLVIERVEVAPPQAKEVRIKVKYTSLCHTDLYWWEAKEQTPLFPRILGHEAAGIVESVGEGVTDLQVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTDRGVMHSDGKSRFSINGTPIYHFVGTSTFSEYTVVHSGSLAKINPLAPLDKVCILSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFEEAKKFGVTEFVNPKDYDKPVHEVIADMTNGGVDRSLECTGNINAMISAFECVHDGWGVAVLVGVPHKDAIFMTKPINMLNERTLKGTFFGNYKPRTDLPSVVDMYMNKTLELDKFITHRVPFSDINKAFDLMLRGEGLRCIISMDD. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10591 419 Pfam Alcohol dehydrogenase GroES-like domain 75 202 IPR013154 -
Seca4g10591 419 SUPERFAMILY GroES-like 43 225 IPR011032 -
Seca4g10591 419 FunFam alcohol dehydrogenase 1-like isoform X1 58 221 - -
Seca4g10591 419 FunFam Alcohol dehydrogenase class-P 222 360 - -
Seca4g10591 419 CDD alcohol_DH_plants 48 415 - -
Seca4g10591 419 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 208 380 IPR036291 -
Seca4g10591 419 Gene3D - 222 360 - -
Seca4g10591 419 Pfam Zinc-binding dehydrogenase 245 375 IPR013149 -
Seca4g10591 419 Gene3D - 58 409 - -
Seca4g10591 419 SUPERFAMILY GroES-like 367 415 IPR011032 -
Seca4g10591 419 PANTHER ALCOHOL DEHYDROGENASE 47 415 - -
Seca4g10591 419 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 108 122 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10591 Seca-Chr4 242193496 242196948 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10591 51 409 Monolignol Biosynthesis Gene Families AT1G72680 23.784 6.46e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10591 K18857 - qsu:112034402 669.848