Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10589 ATGGCGAGCACTGCTGGTCTTGTCATCCCGTGCAATGCTGCGGTTGCATGGGAAGCAGGGAAACCTTTGGTGATGGAGCGTGTGGAGGTGGCTCCACCACAGGCCAGGGAAGTGAGGATCAAAGTCAAATATACCTCACTTTGCCACACTGATCTTTACTTCTGGGAGGCCAAGGGACAAACTCCTCTGTTTCCCCGAATTTTTGGCCATGAGGCAGTCGGAATTGTGGAGAGTGTTGGAGAAGGTGTCACAGATCTGCAGGTTGGGGATCATGTGCTCCCAGTATTCACTGGGGAATGTGGTGAGTGTGCACATTGCAAATCTGAGGAAAGTAACATGTGTGATTTGTTGCGAATAGATACAAACAGAGGAGTCATGCATAATGATGGTAAAAGCAGATTCTCTATTAACGGTACCCCAATAAACCACTTTGTTGGCACATCCACTTTTAGTGAATACACTGTGGTACATTCTGGCTGCCTAACAAAGATCAATCCACTAGCACCTATGGACAAAGTCTGTGTCCTCAGTTGTGGCATCTCAACAGGGTTAGGAGCAACTTTAAATGTAGCAAAACCAAAGAAGGGATCTACGGTAGCAGTATTTGGTCTTGGAGCTGTTGGCCTTGCTGCTGCTGAGGGTGCAAGAATTGCTGGCGCATCTAGAATTATTGGAGTTGATTTGAATCCAAATAGGTTTGAGGAAGCCAAAAAATTTGGGGTAACCGAGTTTGTGAATCCAAAGGACTATGATAAGCCAGTTCAAGAGGTGATTGCTGATATGACAAATGGAGGAGTAGACCGAAGCATAGAGTGCACTGGAAACATCAATGCCATGATATCCGCATTTGAATGTGTTCATGATGGGTGGGGTGTTGCTGTGCTGGTTGGAGTACCCAATAAGGATGCAGTTTTTATGACCAAGCCCATTAATGTACTCAACGAAAGAACACTGAAAGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGACCTTCCTTCTGTTGTTGATATGTACATGAATAAGACATTGGAACTGGACAAGTTTATAACCCATAGGATTCCTTTTTCTGATATCAACAAGGCATTTGATTTAATGTTGAGAGGAGAGGGAATAAGGTGTATCATTAGCATGGATGACTAG 1143 0.4444 MASTAGLVIPCNAAVAWEAGKPLVMERVEVAPPQAREVRIKVKYTSLCHTDLYFWEAKGQTPLFPRIFGHEAVGIVESVGEGVTDLQVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTNRGVMHNDGKSRFSINGTPINHFVGTSTFSEYTVVHSGCLTKINPLAPMDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPNRFEEAKKFGVTEFVNPKDYDKPVQEVIADMTNGGVDRSIECTGNINAMISAFECVHDGWGVAVLVGVPNKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKTLELDKFITHRIPFSDINKAFDLMLRGEGIRCIISMDD. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10589 380 Gene3D - 19 370 - -
Seca4g10589 380 CDD alcohol_DH_plants 9 376 - -
Seca4g10589 380 Gene3D - 183 321 - -
Seca4g10589 380 PANTHER ALCOHOL DEHYDROGENASE 8 376 - -
Seca4g10589 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Seca4g10589 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Seca4g10589 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Seca4g10589 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Seca4g10589 380 Pfam Alcohol dehydrogenase GroES-like domain 36 162 IPR013154 -
Seca4g10589 380 SUPERFAMILY GroES-like 328 376 IPR011032 -
Seca4g10589 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Seca4g10589 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10589 Seca-Chr4 242179508 242182783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10589 22 181 Monolignol Biosynthesis Gene Families AT4G37970 30.247 9.08e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10589 K18857 - zju:107426564 679.478