Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10577 ATGAATCAACACATTCTGGGTTTCACTGGTTCCACAAATGAAGTTCGGTTGAGGAATCAATCTTTACCAATTCTGCAGGGTCAGAGATTTGCTGCTGGACCCAGATTTGAAAATTCCTTCTTTGAGCAAAGTAGGAAATTTGATCATCTTCAGTCTGATCCAATATCTGCTAATACACCTTCATCCTCTACTGTTACCCATGAGGAGCATTCACCAGAGGATTGTGATTTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAAGAAGACATGGAAGACAAGACATGCATGCTTCAAGATTCTTTAGATCTTCAAGCAGCTGAGAAATCTTTCTATGATGTGCTGGGTAAAAAATACCCACCCTCACCAATACGAAATCCAAGTTTTATCAATCAAAATGATGGGGTAGGAGGTAATAACTTGTCTGTAAATTATGGTAATTGTCCTAGGACTAATGGTGATCTCAGCAGCATTTTTACTACTAATTTTTTGCTCCCAAACTCAGTTGACTTTCCTCAACAAAGTCTTCAAGGCAATAGTATCTTGCAATCAACTTATAGCCCTTCCAATAGTGTAATAAGTAGTGTGGAAGGTTTTCCTCAGGTCCCTGATTTGAGCAGTGAGAGTCAATCCATTTGGCAATTTCAGAAGGGTGTTGAGGAGGCTAGTAAGTTTCTTCCTAGTGGAAATGGGCTATTTCCTAATTTGCCAGCACTAGAGCCAAAAGTGGGAATTGATGATTTGTCAGTTAAGGTGGAGAAGGATGAGGAGGAATGTGTTCTTGGTGGTTCCACTGGAAGGAAGCATCCTCTCAGGGAAGAGGGAGATGTTGAAGAAAATAGAAGCAGCAAGCAAGCAGCAATTTATTCTGAACCAACATTGCGGTCAGATATGGTTGATATAATCCTGCTTCATAGTGCAGGGGATGGTAAGGACCATTATGTGGCTAGACGTGAGGCTTTGCAGAATAAGACAAACAAGACAACATTATCAAGTAGTCAATCAAAAGCTTCCAGTAATGGGAAGGGACGTGGTAAGAAACAAAGAGGGAAAAAGGAAGTGATTGATTTGAGAACACTTCTGGTCCTTTGTGCACAAGCTGTTGCTGCAGATGACAATAGGAATGCACATGAGTTGCTAAAGCAGATCAGGCAACACTCAAATCCTTTTGGGGATGGAAATCAGAGGCTGGCTCATATCTTTGCAGATGGTCTTGAGGCACGCTTGGCTGGTACTGGAAGCCAAATCTATAAAGGACTTGTTAGTAAAAGAAGATCAGCTGCTGATATTCTAAAAGCTTATCATCTATACCTTGCTGCATGCCCTTTTAGGAAAATTTCTAATTTTACCTCAAATGTCACTATAAGGACAGCTTCAGCAAATTCAATGAGGGTCCATGTTATAGATTTTGGTATCCTTTATGGTCTTCAGTGGCCTACTTTTATACAGAGACTTTCATGGAGGGAAGGAGGACCACCAAAGCTTCGGATTACAGGAATAGACTTTCCACAACCTGGTTTCAGACCTGCAGAGAGAGTTATAGAAACAGGACGCCGCTTGGCAGCTTATGCTGAAGCCTTTAATGTTCCATTTGAATATAATGCCATAGCAAAGAAATGGGAAACAATTCAACTTGAAGAACTCAAGATTGATAGGGATGAGTTCCTTGTTGTTACCTGTTTTTATAGAGGTAAGAACTTGCTGGATGAATCTGTAGCAGTGGACAGTCCAAGGAATAGTTTCCTCAGTTTGATTAGGAAGATCAACCCAAATATATTCATTCATGGCATTATGAATGGGGCATTTAATGCCCCTTTCTTTGTTACCAGATTCAGGGAGGCACTGTTTCACTATTCATCACTATTTGATATGCTTGAAACTATTGTGCCTCGAGAGGACTGGGAAAGGATGCTGATTGAGAAAGAGATATTTGGGAGGGAAGCATTGAATGTTATAGCTTGTGAAGGCTGTGAAAGAGTAGAGAGGCCTGAGACATATAAGCAGTGGCAAGCACGTATTCTAAGGGCAGGGTTTTTGCAACAACCTTTTGATCATGAGACTGTGAAGATGGCAATGGAGAAAGTGAGCACTGGCTACCACAAGGATTTTGTAATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGTATCATTTATGCACTTTCTTGTTGGAGACCTGCATGA 2202 0.4101 MNQHILGFTGSTNEVRLRNQSLPILQGQRFAAGPRFENSFFEQSRKFDHLQSDPISANTPSSSTVTHEEHSPEDCDFSDAILSYISQILMEEDMEDKTCMLQDSLDLQAAEKSFYDVLGKKYPPSPIRNPSFINQNDGVGGNNLSVNYGNCPRTNGDLSSIFTTNFLLPNSVDFPQQSLQGNSILQSTYSPSNSVISSVEGFPQVPDLSSESQSIWQFQKGVEEASKFLPSGNGLFPNLPALEPKVGIDDLSVKVEKDEEECVLGGSTGRKHPLREEGDVEENRSSKQAAIYSEPTLRSDMVDIILLHSAGDGKDHYVARREALQNKTNKTTLSSSQSKASSNGKGRGKKQRGKKEVIDLRTLLVLCAQAVAADDNRNAHELLKQIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRRSAADILKAYHLYLAACPFRKISNFTSNVTIRTASANSMRVHVIDFGILYGLQWPTFIQRLSWREGGPPKLRITGIDFPQPGFRPAERVIETGRRLAAYAEAFNVPFEYNAIAKKWETIQLEELKIDRDEFLVVTCFYRGKNLLDESVAVDSPRNSFLSLIRKINPNIFIHGIMNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQARILRAGFLQQPFDHETVKMAMEKVSTGYHKDFVIDEDSQWLLQGWKGRIIYALSCWRPA. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10577 733 MobiDBLite consensus disorder prediction 51 66 - -
Seca4g10577 733 MobiDBLite consensus disorder prediction 325 344 - -
Seca4g10577 733 ProSiteProfiles GRAS family profile. 351 731 IPR005202 -
Seca4g10577 733 MobiDBLite consensus disorder prediction 259 291 - -
Seca4g10577 733 Pfam GRAS domain family 360 731 IPR005202 -
Seca4g10577 733 MobiDBLite consensus disorder prediction 259 284 - -
Seca4g10577 733 MobiDBLite consensus disorder prediction 51 73 - -
Seca4g10577 733 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 300 725 IPR005202 -
Seca4g10577 733 MobiDBLite consensus disorder prediction 325 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10577 Seca-Chr4 241950020 241952242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10577 73 732 GRAS Transcription Factor Family AT2G37650 56.953 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g10577 GRAS 2.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10577 - - gmx:100780785 1170.22