Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10572 ATGGCTGGAACGGGTCCACTCTGCATTGCAACACTCGTCACTCTTTTTGTTGCAACCAGTGCTCGAATTCCTGGAGTTTTCACCGGTGGCTCATGGCAGAGTGCCCATGCCACTTTCTACGGTGGAAGTGATGCCTCTGGAACAATGGGTGGTGCATGTGGGTATGGAAATCTGTACAGCCAAGGGTATGGTGTGAACAATGCTGCTCTGAGCACAGCACTGTTCAACAATGGTTTGAGCTGTGGTGCATGTTTTGAGATCAAGTGTGACCAAGATCCAAGATGGTGCAACCCTGGAAGCCCTTCCATCATCATCACTGCCACAAACTTTTGCCCTCCAAACTTGGCTCTCCCCAGTGACAATGGTGGTTGGTGCAACCCACCACGCCAACACTTCGACCTCGCCATGCCAATGTTCCTCAAGATCGCTCAGTACCGTGCAGGAATCGTCCCCGTCAGTTACCGCCGGGTTCCATGTAGAAAGAAGGGTGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTTTGGTCACCAACGTTGCGGGTGCAGGGGATATCGTGCGCGTGAGTGTGAAAGGCACAAAAACTGGGTGGAACAGCATGAGCAGGAACTGGGGGCAAAATTGGCAATCCAACTCCGATTTAGTGGGCCAGGCCCTGTCTTTTAGAGTCACGGGTAGTGACAGACGCACCTCAACCTCGTGGAACGTGGCACCACCTAATTGGCAGTTCGGTCAGACCTTCATGGGCAAGAATTTCCGAGTCTGA 777 0.5199 MAGTGPLCIATLVTLFVATSARIPGVFTGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSIIITATNFCPPNLALPSDNGGWCNPPRQHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGTKTGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPPNWQFGQTFMGKNFRV. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10572 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Seca4g10572 258 FunFam Expansin 21 160 - -
Seca4g10572 258 PANTHER EXPANSIN-A15 13 256 IPR002963 GO:0009664
Seca4g10572 258 Pfam Lytic transglycolase 68 154 IPR009009 -
Seca4g10572 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Seca4g10572 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Seca4g10572 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Seca4g10572 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Seca4g10572 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Seca4g10572 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Seca4g10572 258 CDD DPBB_EXPA_N 32 159 - -
Seca4g10572 258 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Seca4g10572 258 Gene3D - 18 160 IPR036908 -
Seca4g10572 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Seca4g10572 258 Gene3D - 164 256 IPR036749 -
Seca4g10572 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Seca4g10572 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Seca4g10572 258 FunFam Expansin 164 256 - -
Seca4g10572 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Seca4g10572 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Seca4g10572 258 SMART dpbb_1 67 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10572 Seca-Chr4 241895749 241898556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10572 9 258 Expansin Gene Family AT2G39700 83.600 3.32e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10572 - - gmx:100803595 510.375