Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10569 ATGGGTGCTTGCTGGAGCAGCAGGGTTAAGGCCGTGAGTCCTTCCAGTACAAGGTTCACTTCTAGAAGCGAGAGCAGAGATGGCTATGACATCAGTTCAAATAGCAAGAGCTCATCAGCCTCCATATCCATGATTCATCGGAGTGAGGGTGAGATCTTACAATCTTCCAATTTGAAAAGCTTTAGCTACAATGAGCTAAGAACAGCCACGAGAAATTTCGCACCAGACAGTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTATAAGGGCTGGATTGATGAGTATTCACTTGCTGCTACCAAGCCAGGGATGGGCATGATTGTTGCTGTGAAGAGACTTAACCAAGATGGATCCCAGGGTCACAAGGAATGGTTGGCTGAAATACACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGAATGAGAATCGACTTCTAGTTTATGAATTTATGCCTAAGGGCAGTGTGGAGAATCATCTGTTCAGGAGAGTATCTCATTTTCAACCACTCTCTTGGACTTTAAGATTGAAAATTGCCCTTGAAGCTGCAAGGGGTCTTGCTTTTCTCCATAACACAGAAACTAAAGTCATATACCGTGACTTTAAGACAGCAAATATCCTACTTGATAATGACTATAATGCCAAACTTTCTGATTTTGGGCTAGCCAGAGATGGACCAACTGGTAGTAAAAGCCATGTTTCTACTAGGGTCATGGGAACCCATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCATCTCACTACCAAGAGTGATGTATATAGTTTTGGAGTGGTTCTTTTGGAAATGTTATCAGGGAGACGTGCATTAGACAAGAACAGACCATGTGGAGAACAAGACTTAGTTCAATGGGCAAAACCTTACCTTTCAAAGAAACGAAAAGTTTTTCGTGTAATGGATGACCGTATTCAACGCCAGTATCGCCTTGATCGAGCTCAAAAGGTAGCCACACTTGCTTTTCAATGTCTTGCTGTTGATCCTAAATTCAGGCCAAATATGGATGAGGTGGTAAGAACATTGGAAAGGCTACAGGAATCAAAAGATAAGCTGAAAAATGGTGATCAGAGAGAGCACAGAGTACGTGGCTCTGGTGTTGGCCATTACAATGGAATTGGCAAAGGAAGTGCAGTTTCTCCCAAAAGGACTGCATATCCTAGGCCTTCTTCCCTTTATGCTTAA 1224 0.4306 MGACWSSRVKAVSPSSTRFTSRSESRDGYDISSNSKSSSASISMIHRSEGEILQSSNLKSFSYNELRTATRNFAPDSVLGEGGFGSVYKGWIDEYSLAATKPGMGMIVAVKRLNQDGSQGHKEWLAEIHYLGQLQHPNLVKLIGYCLENENRLLVYEFMPKGSVENHLFRRVSHFQPLSWTLRLKIALEAARGLAFLHNTETKVIYRDFKTANILLDNDYNAKLSDFGLARDGPTGSKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGRRALDKNRPCGEQDLVQWAKPYLSKKRKVFRVMDDRIQRQYRLDRAQKVATLAFQCLAVDPKFRPNMDEVVRTLERLQESKDKLKNGDQREHRVRGSGVGHYNGIGKGSAVSPKRTAYPRPSSLYA. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10569 407 MobiDBLite consensus disorder prediction 362 407 - -
Seca4g10569 407 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Seca4g10569 407 SUPERFAMILY Protein kinase-like (PK-like) 51 361 IPR011009 -
Seca4g10569 407 Pfam Protein tyrosine and serine/threonine kinase 77 355 IPR001245 GO:0004672|GO:0006468
Seca4g10569 407 Coils Coil 348 368 - -
Seca4g10569 407 MobiDBLite consensus disorder prediction 16 37 - -
Seca4g10569 407 FunFam Probable serine/threonine-protein kinase PBL8 159 374 - -
Seca4g10569 407 MobiDBLite consensus disorder prediction 362 378 - -
Seca4g10569 407 PANTHER OS01G0588500 PROTEIN-RELATED 36 359 - -
Seca4g10569 407 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Seca4g10569 407 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Seca4g10569 407 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10569 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca4g10569 407 CDD STKc_IRAK 79 358 - -
Seca4g10569 407 Gene3D Transferase(Phosphotransferase) domain 1 159 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10569 Seca-Chr4 241878503 241882131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10569 51 363 Glycoside Hydrolase AT3G07070 48.408 7.98e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g10569 PK_Tyr_Ser-Thr 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10569 - - gmx:100795058 637.106