Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10567 ATGAAGGAGAGGCAACGTTGGACAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAGCGCATGAACACAGCTCTTAACAGGGATGCAAAGTCATGCTTAGAAAGATGGAAGAACTACCTCAAGCCTGGCATTAAGAAAGGATCTCTTAGTAAAGAAGAGCAGCGTCTTGTTATCCGCCTTCAAGCAAAATACGGAAACAAATGGAAGAAAATTGCTGCTGAAGTCCCCGGTCGCACTGCTAAGAGGTTAGGCAAGTGGTGGGAAGTCTTCAAAGAGAAGCAGCAGAGAGAAAAAAGGGACATCAATAGGATTGCTGACCCAATTAATGATAGCAAGTACGAGCACATACTAGAGAGTTTTGCAGAAAAACTAGTGAAGGAGCGCCCTTTACCATCATTTGTTATGGCTGCTTCCAATGGGGCATTTCTGCATACCAATACTACTGCACCAGCCCCTGCATCAGCTTTGCTTCCTTCTTGGCTTTCCAATTCTAATAATGCAACACCTGTTCCCCCAAGTTCCATTTCTGTGACCCTAAGTCTTTCTCCTTCAACAGTGGCAGCACCTCCATTTTCATGGTTGCAACCTGAGAGAGGCACAGAGAATCCTCCTTTTGTTTTAGGGAATGTACCACCACATCACGGATCTGTTCCAACTTTTAGTGATAACATGCTCATATCTGAATTGGTGGAGTGCTGTAAAGAGTTGGAAGAGGGGCATCATGCTTGTGCAGCACATAAGAAGGAGGCAGTGTGGAGGTTAAGTAGGGTGGAGTTGCAGCTGGAGTCAGAGAAGGCATGTCGAAGAAGGAAGACAATGGAAGAATTCGAAGCAAAGATTAAAGCTCTTCAGGAAGAGCAGAAAGCTGCTTTGGGTAGAATTGAAGAAGAATACAAGGAACAGTTAGCTGAATTGAGGAGAGATGCTGAAACCAAGGAGCAAAAGTTGGCAGAGCAATGGGCTGCAAAGCATTCAAAGCTGGCTAGATTACTTGAGCAAATAGGATGTAGACCAGGGCTTCCTGAGCCAAATGCAATATCATTGGCAAATCAAATATAG 1098 0.4454 MKERQRWTAEEDALLRSYVKQYGPREWNLVSQRMNTALNRDAKSCLERWKNYLKPGIKKGSLSKEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKRDINRIADPINDSKYEHILESFAEKLVKERPLPSFVMAASNGAFLHTNTTAPAPASALLPSWLSNSNNATPVPPSSISVTLSLSPSTVAAPPFSWLQPERGTENPPFVLGNVPPHHGSVPTFSDNMLISELVECCKELEEGHHACAAHKKEAVWRLSRVELQLESEKACRRRKTMEEFEAKIKALQEEQKAALGRIEEEYKEQLAELRRDAETKEQKLAEQWAAKHSKLARLLEQIGCRPGLPEPNAISLANQI. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10567 365 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Seca4g10567 365 SMART sant 3 55 IPR001005 -
Seca4g10567 365 SMART sant 58 106 IPR001005 -
Seca4g10567 365 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca4g10567 365 CDD SANT 6 53 IPR001005 -
Seca4g10567 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Seca4g10567 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Seca4g10567 365 Pfam Myb-like DNA-binding domain 7 68 - -
Seca4g10567 365 FunFam MYB-related transcription factor 4 58 - -
Seca4g10567 365 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Seca4g10567 365 Gene3D - 4 58 - -
Seca4g10567 365 Coils Coil 286 332 - -
Seca4g10567 365 CDD SANT 63 104 IPR001005 -
Seca4g10567 365 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 352 - -
Seca4g10567 365 Gene3D - 62 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10567 Seca-Chr4 241850432 241851529 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10567 1 354 MYB Transcription Factor Family AT2G37630 63.612 3.93e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g10567 Myb_DNA-bind_6 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10567 K09422 - gmx:100101908 566.229