Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10558 ATGGTGGAAGATAAGTTAGCACATGTAAGGAAACACACATCTGGTGCCTCCAATCATGTTTGCAAGCATTTTGTTGATACCTTGGATACAATCAAGATGAACAAGAACAAGGACTTATTATTAACATTTATGCAAGATCCAGTCTCTCCTTTGGTCAATCACTTCCATAAACAACAGGTGTATAGCACAAAAATGAGATTGACCAGGTCTGTATCATTTCCTTTATCTGACTCATTATCAAAAAGAAGAGGTTTTGGGGCTATAGGCAATGGTTATCTTCAAAAAGGGCAAGGAAAGTTAGTTTTTGGAAATAAAACACAAAAATCAGTTCAATTTGAACCCTCAAAAAATTCATGTGAACAGGCCATGCCATCAGTAGCAAAATGGAGAGAAAATGGAAATTTCAATATAAATGAAGCAATAGTAAGAGATGTCAATTCTTCTTCAGGATCTGCTCAGGGTCAGAACCAGAAAGAAAGCAAACATGCTAAGAATCTCAAACAGAAAATAGAGCATGTAACTGGAGAGAGCAGAAAAGAAAAGCTTCGTGTTACAATGGATGCTGTCATTCATAAACTCCCCCAAGGCCATGGGATATCAGATGACTTGAAGAAAGAAATTGCTAAGAAACTGACTGAACCTAATATTACTAGAGAAGGTGAACACTGTTCTCCTAGTTGTAATGATAGTGATCCCTCTACTCCTTCCTTTCCCAAGGATAACAAGCACAGCATAAGAAGAAACTGGTCCCTTCAAGATTCACTAGAAAGTTATTGTCAACTTCATGAGAATAGCTTTAACACAGAAGCTAGTAACCCTCAATCTGAGCAACTAAAACTAAGACCAGAAAAGGCATGTTCACCATTGAGGAAGCAGATACCCTTTCAAAGGATTCTTTCATTACCTGATCTCCAATCTTTTACCTATGCTTATCAGATTGGGGAGATTTCTGATATTTTATCTCTCACTGAGCCAATCAAGGCTTCTGAGGATGGAACTGTGAGTTCTGAGAGTATTAGTTATCAGAAAAAGAAGCTTGGCCTTAATGTGCATTCAAAAAGTCCATTGCAGTTAGATACACCTCTGGAAAATTTGAATCAAGAGAACCATGTTAGTGTAGGTGAAAATGATTTAGTGACTGGTGCTAATATTGTGGGATCAGGATCAGATTGTAGCAGTGAAATTAATGACAAGGTGATCATGATAATTGATGATTTTGGACACAGTAGTTTAAAAAACGATGGCACTTCCAATGACCAAGGTATTGGGCCAATAAAAGAATACCAGGCTGCAATAGCTGCATCAGATTCAAAATCTAAGCCAGAATCTATTGATAGAGTGGATAATGTGGCTGAGCAACAAGAGTCTAATATGGATTCCCTTAAAGTGGCTGAGACCACAGAGAGTGCTAAAAAAGTGGAGATTCTAACCAAGCAATTGAATTATGAGATTCCTCATTTTCATGTGGACACCAGAGACAAAGCTGAGTTCAATTATGTGAAATATGTACTTGAGATATCTGGACTGACTGGTAATGATTGCCTTTCAGCATGGCATTCTAGTGACCAACCAATTGATCCATTACTTTATGAAGAAATGGAAGGTGATCCTGATTTCTGTACTTATGAAGCTGGTCAATGTAATCACCATGTATTGTTTGATTTAATTAATGAGACATTGTTGGAAATTTATGGGAAGTCTTACTGCTACCTTCCCATACAATTGTCATATCTTCCCCACATTCATCCAATGTCAGTAGGGTGTCACATTCTCCATCAAGTGTGGACTCATATGAGCAAGTGCATGAGATCCAAACCTGGCCAAACAATAGATGATCATGTAAATAGAGATCTAACAAAGCATGATGAGTGGGTGAACCTTCAATTATGTGCTGAGTGTGTAGGTTTGGAGCTGGGAGACTTGATTTTCCATGATCTCCTAGAGGAAATAATGTGGGACTTAGCTAGCTTGTGA 1974 0.3799 MVEDKLAHVRKHTSGASNHVCKHFVDTLDTIKMNKNKDLLLTFMQDPVSPLVNHFHKQQVYSTKMRLTRSVSFPLSDSLSKRRGFGAIGNGYLQKGQGKLVFGNKTQKSVQFEPSKNSCEQAMPSVAKWRENGNFNINEAIVRDVNSSSGSAQGQNQKESKHAKNLKQKIEHVTGESRKEKLRVTMDAVIHKLPQGHGISDDLKKEIAKKLTEPNITREGEHCSPSCNDSDPSTPSFPKDNKHSIRRNWSLQDSLESYCQLHENSFNTEASNPQSEQLKLRPEKACSPLRKQIPFQRILSLPDLQSFTYAYQIGEISDILSLTEPIKASEDGTVSSESISYQKKKLGLNVHSKSPLQLDTPLENLNQENHVSVGENDLVTGANIVGSGSDCSSEINDKVIMIIDDFGHSSLKNDGTSNDQGIGPIKEYQAAIAASDSKSKPESIDRVDNVAEQQESNMDSLKVAETTESAKKVEILTKQLNYEIPHFHVDTRDKAEFNYVKYVLEISGLTGNDCLSAWHSSDQPIDPLLYEEMEGDPDFCTYEAGQCNHHVLFDLINETLLEIYGKSYCYLPIQLSYLPHIHPMSVGCHILHQVWTHMSKCMRSKPGQTIDDHVNRDLTKHDEWVNLQLCAECVGLELGDLIFHDLLEEIMWDLASL. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10558 657 MobiDBLite consensus disorder prediction 212 243 - -
Seca4g10558 657 MobiDBLite consensus disorder prediction 160 179 - -
Seca4g10558 657 Coils Coil 444 464 - -
Seca4g10558 657 Pfam Domain of unknown function (DUF4378) 496 649 IPR025486 -
Seca4g10558 657 MobiDBLite consensus disorder prediction 146 179 - -
Seca4g10558 657 PANTHER PROTEIN TRM32 3 654 IPR044257 -
Seca4g10558 657 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10558 Seca-Chr4 241618400 241624000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10558 477 643 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 45.556 2.39e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10558 - - gmx:121174644 780.4