Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10556 ATGGGTAACAGCATCGGGAAAGTGTGCCTCTGTTCCGCCGGCGCCGGAGATATCTCCCGCCGGCACAACAACAACCCTCTCGGCGACTCAATCTTATATGTCCGACCACCGGACCCATTTTCCGACTGTGACGTCACCACCACTTTCCGATCAGTTTCCGGCGCCTCCGTGAGCGCCAACTCCTCCACCCCTCCTTCCACCTCCACCACCATCTCCGACGTCGTTTTGGATTCCTCTGCGTCGTTTGAGAGCTCCACGTCGTTCACCTCTTCGTTGTCGATGGTGGTGCCTCTGCAGAATCATCATCACCACCACGCTTCTCGCGCCGCTTGGTGGAGTAGCCCCATGGTGGATATAGGCTTCTCTTCAGGTCCTGTGCTGAACGAAAGTGGTTCTTCTGAGACAGTGAAGAAGCTTCGGAGGAGCTTCTCTCATGATGGATATGATGATGGGTTTGGAAACAAACCAAAAAAACAGAACTTGAAGAAGATTCTCAAGAGGGTGGTTTCTGGGGTGGTTTCAATCAAGAAGAAGGGCGAGAATGCTAATGGTATTGGTAATGTCACGGTGAGTGGTGGTTTGAGCTTACATGATGGTGAGGATGGTATTGATGATGATGAGAACTATTTGGATGATGGTGGTGGTGATTTGGTTTTGATGGGAAGTGAGAATCTTCAGTGGGCTCAAGGGAGAGCTGGTGAGGATCGTGTGCATATTGTGATTTCTGAGGAGCATGGATGGGTTTTTGTGGGAATCTATGATGGATTCAATGGCCCAGATGCCACTGATTATCTTCTTGACAATCTCTTCTATGCTGTCTATGATGAGCTTAAGGGGTTGCTCTGTGGTCATAAGTCAGAAGAGTCCATGGACTTGGAGGAAGACAGAGTGTTGTTGGGTTTTGTTAAGGGAAATGATGATGGATCTCAAATGGTTAATTGTTATAAAGAAAACTATCCAATGGAAAATGAAAAGTTGAAAGTAGAGGGGGAAAGAATACAGATGAAAAAGAATACAGGGTGGGAAAATGAGGGGGAAAGTGAAAAAGTTGGCCTTGACAATGCAGATGCAAAAGGTTCATCAACTTTTAGCCACTCAGATGTGTTATTAGCTCTTTCTGTGGCGTTAAGGAAGACAGAAGATGCTTTTCTGAAGAGTGTTGATGAAATGATAAACAATAATCCTGTGTTAGCTATGATGGGTTCGTGTGTTTTGGTAATGCTGATGAAGGGAGAAGATGTTTACTTGATGAATGTGGGAGACAGTCGTGCTGTCTTAGCTACTCACTCTGCCAATTCCCTTCAGCTCACCATGGAGCATAGCACGCACATTAAAGAGGAGGTTCAAAGAATCAGGAAGGAACACCCAGATGACCCTTCTGCAATAACTAAAGGCAGGGTGAAAGGTTACTTGAATGTCACAAGGGCTTTTGGGGCTGGATTCCTCAAACAGCCTAAACAAAATAATGCAGTATTAGAGACTTTCAAAGTTAACTACATAGGGGAGTCCCCATACATCTCATGTTCCCCTTCACTCCACCACCACAGACTCAGCCCAAGTGACAGGTTCTTGATACTGTCTTCTGATGGACTTCACCAGTACTTCACAAATGAAGAAGCAGTTGCCAAAGTGGAGTCATTCATCACTTTGTCTCCAGATATAGACCCTGCACAACTTCTCATTAAAGAAGCACTATGTAGAGCAGCCAAAAAAGCTGGTGAAAAGCCCTTAGCTTTAATTTCTCACCACAAAAAATAA 1758 0.4556 MGNSIGKVCLCSAGAGDISRRHNNNPLGDSILYVRPPDPFSDCDVTTTFRSVSGASVSANSSTPPSTSTTISDVVLDSSASFESSTSFTSSLSMVVPLQNHHHHHASRAAWWSSPMVDIGFSSGPVLNESGSSETVKKLRRSFSHDGYDDGFGNKPKKQNLKKILKRVVSGVVSIKKKGENANGIGNVTVSGGLSLHDGEDGIDDDENYLDDGGGDLVLMGSENLQWAQGRAGEDRVHIVISEEHGWVFVGIYDGFNGPDATDYLLDNLFYAVYDELKGLLCGHKSEESMDLEEDRVLLGFVKGNDDGSQMVNCYKENYPMENEKLKVEGERIQMKKNTGWENEGESEKVGLDNADAKGSSTFSHSDVLLALSVALRKTEDAFLKSVDEMINNNPVLAMMGSCVLVMLMKGEDVYLMNVGDSRAVLATHSANSLQLTMEHSTHIKEEVQRIRKEHPDDPSAITKGRVKGYLNVTRAFGAGFLKQPKQNNAVLETFKVNYIGESPYISCSPSLHHHRLSPSDRFLILSSDGLHQYFTNEEAVAKVESFITLSPDIDPAQLLIKEALCRAAKKAGEKPLALISHHKK. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10556 585 SUPERFAMILY PP2C-like 231 567 IPR036457 -
Seca4g10556 585 SMART PP2C_4 207 567 IPR001932 -
Seca4g10556 585 Pfam Protein phosphatase 2C 378 571 IPR001932 -
Seca4g10556 585 ProSiteProfiles PPM-type phosphatase domain profile. 219 585 IPR001932 -
Seca4g10556 585 Gene3D - 217 584 IPR036457 -
Seca4g10556 585 PANTHER PROTEIN PHOSPHATASE 2C 223 568 IPR015655 GO:0004722|GO:0006470
Seca4g10556 585 CDD PP2Cc 361 570 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10556 Seca-Chr4 241602446 241605469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10556 1 573 PP2C-type Phosphatase Gene Family AT2G28890 44.204 8.49e-149 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10556 - K01102 gmx:100804061 551.592