Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10541 ATGTACAATCTTTGGAAGCTATCTGGTGCTTTTCAGCACTTAAAAAACAATGCATTGCTTCGATCTCCTGTGTTTGCCAGCAACATGTCTTCCGCTGCTGGCAAGGTAATTCCTTGCAAAGCTGCAGTTGCATGGGAAGCAGGGAAGCCATTGGTGATTGAGAATGTGGAGGTTGCTCCTCCACAGGAGAGTGAAGTTAGGATCAGAGTCAAATATTCCTCACTTTGCCATACTGATCTCCATTTCTGGGAATCCAAGGGTTTGCCACCAATGTTTCCACGCATATTTGGCCATGAAGCATCTGGTATTGTGGAGAGTGTAGGTGATGGGGTATTAGACCTCAAGGCAGGGGATCATGTGCTTCCAGTATTCACAGGGGAGTGTGGGGAATGCCCACATTGCAAATCTGAGGAGAGCAATATGTGTGATTTGTTGAGAATAAATCCAGCAAGAGAAGTCATGATCAGTAATGGAAAGTCTAGGTTCTCTATTAATGGCAAACCCATAAGCCACTTTCTTGGCACATCTACTTTTAGCCAATACACTGTTGTTCATTCAGGTTGTGTTGTAAAGATCAATCCAAAAGCTCCTCTTGACAAAGTTTGCATCCTCAGTTGTGGCATCACAACAGGATTAGGAGCAGTTCTGAATGTTGCAAAGCCAAAGAAAGGTGCTTCCATAGCAGTATTTGGGCTTGGAACTGTTGGGCTAGCTAAAAATTCCCTATGGTTATATGATCAGGCAGTAGAAGGTGCAAGAATTGCTGGGGCATCCAAGATTATTGGGGTTGATTTGAATCCTAACAGATTTAAGGAAGCCAAGAAATTTGGATTAACTGATTTTATAAATCCGAAAGAACATAAAAAGCCAGTTCATGAGGTCCTGAAGGATATGACAAATGGAGGAGTAGATAGGAGTGTAGAGTGCACTGGAAACATCAACGCCTTGATGTCTGCTTTAGATGCTGCACATGATGGATGGGGTCGTGCTGTCCTTGTTGGAGTACCTAGTATTGATGCAGTTTTCAAGACAAGTCCCTACAATTTCCTTGATGGAAAGACAATTACAGGTACTACCTTTGGGAACTACAAGCCTAAAACAGGCCTTCCATCAATGGTTGATTTGTTCATGAACAATACATTGGAGTTGGATAAGTTTATAACTCATAGAGTTCCTCTCTCAGAAATCAATAAGGCCTTTGACTACATGATTAAGGGGCAGAGTTTAAGGACAATCATAGATATGGAAAACTAG 1254 0.4219 MYNLWKLSGAFQHLKNNALLRSPVFASNMSSAAGKVIPCKAAVAWEAGKPLVIENVEVAPPQESEVRIRVKYSSLCHTDLHFWESKGLPPMFPRIFGHEASGIVESVGDGVLDLKAGDHVLPVFTGECGECPHCKSEESNMCDLLRINPAREVMISNGKSRFSINGKPISHFLGTSTFSQYTVVHSGCVVKINPKAPLDKVCILSCGITTGLGAVLNVAKPKKGASIAVFGLGTVGLAKNSLWLYDQAVEGARIAGASKIIGVDLNPNRFKEAKKFGLTDFINPKEHKKPVHEVLKDMTNGGVDRSVECTGNINALMSALDAAHDGWGRAVLVGVPSIDAVFKTSPYNFLDGKTITGTTFGNYKPKTGLPSMVDLFMNNTLELDKFITHRVPLSEINKAFDYMIKGQSLRTIIDMEN. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10541 417 FunFam S-(hydroxymethyl)glutathione dehydrogenase 211 358 - -
Seca4g10541 417 Gene3D - 211 358 - -
Seca4g10541 417 PANTHER ALCOHOL DEHYDROGENASE 34 413 - -
Seca4g10541 417 SUPERFAMILY GroES-like 366 413 IPR011032 -
Seca4g10541 417 Gene3D - 47 407 - -
Seca4g10541 417 FunFam Alcohol dehydrogenase 6 42 226 - -
Seca4g10541 417 SUPERFAMILY GroES-like 33 215 IPR011032 -
Seca4g10541 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 197 378 IPR036291 -
Seca4g10541 417 Pfam Zinc-binding dehydrogenase 248 363 IPR013149 -
Seca4g10541 417 CDD alcohol_DH_plants 37 414 - -
Seca4g10541 417 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 97 111 IPR002328 GO:0008270|GO:0016491
Seca4g10541 417 Pfam Alcohol dehydrogenase GroES-like domain 64 191 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10541 Seca-Chr4 241390171 241393027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10541 63 417 Monolignol Biosynthesis Gene Families AT4G37990 22.581 3.42e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10541 K18857 - nnu:104602143 614.379