Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10540 ATGTACAATCTTTGGAAGCTATCTGGTGCTTTTCAGCACTTAAAAAACAATGCAATGCTTCGATCTTCTGTGTTTTCCAGCAACATGTCTTCCACTGCTGGCAAGGTAATTCCTTGCAAAGCAGCAGTTGCATGGGAAGCAGGGAAGCCATTGGTGATTGAGAATGTTGAGGTTGCTCCACCACAGGAGAATGAAGTTAGGATCAAAGTCAAATATTCCTCACTTTGCCATACTGATCTCCATTTCTGGGAATCCAATTGTCAGGGTTTGCCACCAATGTTTCCACGCATATTTGGCCATGAAGCATCTGGTGTTGTGGAGAGTGTAGGTGATGGGGTATTAGACCTCAAGGCAGGGGATCATGTGCTTCCAGTATTCACAGGGGAGTGTGGGGAATGCCCACATTGCAAATCTGAGGAGAGCAATATGTGTGATTTGTTGAGAATAAATCCAGCAAGAGAAGTCATGATCAGTGACGGAAATTCTAGGTTCTCTATTAATGGCAAACCCATAAGCCACTTTCTTGGCACATCTACTTTTAGCCAATACACTGTTGTTCATTCAGGTTGTGTTGTAAAGATCAATCCAAAAGCTCCTCTTGACAAAGTTTGCATCCTCAGTTGTGGCATCACAACAGGATTAGGAGCAGTTTTGAATGTTGCAAAGCCAAAGAAAGGTGCTTGCATAGCAGTATTTGGGCTTGGAACTGTTGGGCTAGCTGCTGTAGAAGGTGCAAGAATTGCTGGGGCATCCAAGATTATTGGGGTTGACTTGAATCCTAATAGATTTAAGGAAGCCAAGAAATTTGGACTAACTGATTTTATAAATCCGAAAGAACATGCAAAGCCAGTTCATGAGGTAGAAGTCCTGAAGGAGATGACAAATGGAGGAGTTGATAGGAGTATAGAATGCACTGGAAACATCAATGCCTTGATATCTGCTTTAGATGCTGTACATGATGGATGGGGTCGTGTTGTCCTTGTTGGAGTACCTAGTATGGATGCAGTTTTCAAGACAAGTCCCTATAATTTCCTTGATGGAAAGACAATTACAGGTACTACCTTTGGGAACTACAAGCCTAAGACAGGCCTTCCATCAATGATTGATTTATTCATGAACAATACATTGGAACTGGATAAGTTTATAACTCATGGAGTTCCTCTCTCAGAAATCAATAAGGCCTTTGACTACATGATTAAGGGGCAGAGTTTAAGGACAATCATAGATATGGAAAACTAG 1239 0.4181 MYNLWKLSGAFQHLKNNAMLRSSVFSSNMSSTAGKVIPCKAAVAWEAGKPLVIENVEVAPPQENEVRIKVKYSSLCHTDLHFWESNCQGLPPMFPRIFGHEASGVVESVGDGVLDLKAGDHVLPVFTGECGECPHCKSEESNMCDLLRINPAREVMISDGNSRFSINGKPISHFLGTSTFSQYTVVHSGCVVKINPKAPLDKVCILSCGITTGLGAVLNVAKPKKGACIAVFGLGTVGLAAVEGARIAGASKIIGVDLNPNRFKEAKKFGLTDFINPKEHAKPVHEVEVLKEMTNGGVDRSIECTGNINALISALDAVHDGWGRVVLVGVPSMDAVFKTSPYNFLDGKTITGTTFGNYKPKTGLPSMIDLFMNNTLELDKFITHGVPLSEINKAFDYMIKGQSLRTIIDMEN. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10540 412 Pfam Alcohol dehydrogenase GroES-like domain 64 193 IPR013154 -
Seca4g10540 412 PANTHER ALCOHOL DEHYDROGENASE 34 408 - -
Seca4g10540 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 199 373 IPR036291 -
Seca4g10540 412 CDD alcohol_DH_plants 37 409 - -
Seca4g10540 412 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 99 113 IPR002328 GO:0008270|GO:0016491
Seca4g10540 412 SUPERFAMILY GroES-like 32 217 IPR011032 -
Seca4g10540 412 FunFam Alcohol dehydrogenase 6 42 226 - -
Seca4g10540 412 Gene3D - 213 353 - -
Seca4g10540 412 FunFam Alcohol dehydrogenase class-P 213 353 - -
Seca4g10540 412 Pfam Zinc-binding dehydrogenase 237 358 IPR013149 -
Seca4g10540 412 SUPERFAMILY GroES-like 361 408 IPR011032 -
Seca4g10540 412 Gene3D - 47 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10540 Seca-Chr4 241317607 241320483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10540 64 412 Monolignol Biosynthesis Gene Families AT1G72680 24.576 5.69e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10540 K18857 - nnu:104602143 609.757