Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10534 ATGGCTTCAAACTCCATGGATGGAGGACCAACACAGCTCACAGATGATTATGATGCCTTGATTTCAACCACTGACGTTGAGCTTCTCAAGCGAGCTTGGCGTAACGAGAAGGCAGCCCCTGAGATTCTTCGCTTTGAAACTGATTTGATCGCCCGCGTCAGAGAACAGATTCAATTGATGGAAGAAACTGTGGAGGAGAAATCTGCTAGTGGTACTAACCCTCTGTCAGTATCTCTGTATCAGATGGACTTGGATAGAACCCTGTTTCTATTAAGATCATATCTTCGCATCCGCATTCAGAAGATTGAAAAGTACATGTTCCACATCCAAAAAACTGAAGAACTTTGGAACAGGCTATCTAGGGACGAGAAGAATTTCACTAGAAGGAAAGGCTATCCTTTGCATTTTTTTCTGACAACAAATGTGTTTTAA 432 0.4236 MASNSMDGGPTQLTDDYDALISTTDVELLKRAWRNEKAAPEILRFETDLIARVREQIQLMEETVEEKSASGTNPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYMFHIQKTEELWNRLSRDEKNFTRRKGYPLHFFLTTNVF. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10534 143 PANTHER SLD5 PROTEIN 11 129 IPR008591 GO:0006261
Seca4g10534 143 Gene3D - 12 142 - -
Seca4g10534 143 Pfam GINS complex protein 51 123 IPR021151 -
Seca4g10534 143 CDD GINS_A_Sld5 25 129 IPR038749 -
Seca4g10534 143 PIRSF GINS_Sld5 1 136 IPR008591 GO:0006261
Seca4g10534 143 Coils Coil 50 70 - -
Seca4g10534 143 SUPERFAMILY GINS helical bundle-like 22 129 IPR036224 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10534 Seca-Chr4 241263708 241266465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10534 1 136 Core DNA Replication Machinery Family AT5G49010 60.145 1.37e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10534 K10735 - gmx:100814216 201.83