Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10525 ATGGAGAAGAATAACGCATTCAAAGATGAAAACCTTCTTCAAAACGAACATCAAGAAGTCTTTGAATCCTTTGTTTGCTGTGTCTGCCTGGATCTGTTATACAAGCCCATTGTGTTATCTTGCGGTCACATATCCTGCTTCTGGTGTGTCCATAAGTCAATGAATGGTTTGCGTGAATCTCATTGTCCAATTTGTAGACATCCATACTATCACTTTCCAACAATCTGTCAAATGCTTCACTTTTTGCTTCTGAAGATCTATCCTCTTGCTTACAAGAGAAGGGAAAAGCAGATACTTGAGGAAGAAGAGAAAACAGGCCTTTTCTCCCCTCAATTTGATGCTTATATGTATGGATCACAAGTTATATTTGATCATCCTGGGAGCTCTCCTTCCTGCACTATTACAAATCCAGTGTCCAACTCTTGCAGCGTAAAATCTTTTGAATGTACGGAGCTATCAGGGTCTGCGACTCATATAGGAGATGAAGGCACCATCAATTCTGAGCACACTTCAGACAAAATACCTGAAGTTATTGGGACTCCTGTTGAAGGAAAAACGTTAATTCAGAATGAGCACAATCAACAACCGAAATTATTAGTTACAGATTTAATGTGTACAATGTGCAAGAAACTTCTCTTCCATCCTGTTGTTCTTAATTGTGGTCATGTATACTGCGAGTCTTGTATCATCGACTTACCTGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCCACAGGATTTCCAAAAGTTTGTTTGGCTCTTGATCACTTTTTAGAGGAGCAATTTCCAGAAGAGTATGCACGGCGGAGGGATTCAATTCAACTTATCCAAATTAAAGTTAAACCTGAGACCACATCTTCTGGTTCGTTGGGAGAAATGATAGCATGGTGTTCTGATCCTGGATTGGCGATTCATGTAGGAGTTGGTTGTGATTTTTGTGGGATGTACCCAATAACTGGGGATAGATATAGATGTGTTGAGTGTAAGGAGAAGATTGGTTTTGATCTTTGTAGTGATTGCTATAAGACCCGCTCAAAGCTTCCAGGCCGATTTAATCAGCAGCACACCCCTGAACACAAGTTCAGGCTTGAACAAAGTTATGGGACGTTTAGGGGACAGTTGAATGGACAAGGGTCTTCGGAAAATTTAGTAATTATAGCCGATGATCCTGTTTCACCTGATGATGGAGAAGATAACCAGAGCAACTCCGAAGCCACCAACTGA 1233 0.4063 MEKNNAFKDENLLQNEHQEVFESFVCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGLRESHCPICRHPYYHFPTICQMLHFLLLKIYPLAYKRREKQILEEEEKTGLFSPQFDAYMYGSQVIFDHPGSSPSCTITNPVSNSCSVKSFECTELSGSATHIGDEGTINSEHTSDKIPEVIGTPVEGKTLIQNEHNQQPKLLVTDLMCTMCKKLLFHPVVLNCGHVYCESCIIDLPDEMLRCQVCQSPHPTGFPKVCLALDHFLEEQFPEEYARRRDSIQLIQIKVKPETTSSGSLGEMIAWCSDPGLAIHVGVGCDFCGMYPITGDRYRCVECKEKIGFDLCSDCYKTRSKLPGRFNQQHTPEHKFRLEQSYGTFRGQLNGQGSSENLVIIADDPVSPDDGEDNQSNSEATN. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10525 410 ProSiteProfiles Zinc finger ZZ-type profile. 308 372 IPR000433 GO:0008270
Seca4g10525 410 FunFam E3 ubiquitin-protein ligase PRT1 17 112 - -
Seca4g10525 410 SUPERFAMILY RING/U-box 195 246 - -
Seca4g10525 410 PANTHER UNCHARACTERIZED 16 369 - -
Seca4g10525 410 FunFam E3 ubiquitin-protein ligase PRT1 192 287 - -
Seca4g10525 410 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Seca4g10525 410 SMART zz_5 307 356 IPR000433 GO:0008270
Seca4g10525 410 SUPERFAMILY RING/U-box 12 76 - -
Seca4g10525 410 MobiDBLite consensus disorder prediction 390 410 - -
Seca4g10525 410 SMART ring_2 205 242 IPR001841 -
Seca4g10525 410 SMART ring_2 26 65 IPR001841 -
Seca4g10525 410 ProSiteProfiles Zinc finger RING-type profile. 205 243 IPR001841 -
Seca4g10525 410 SUPERFAMILY RING/U-box 300 365 - -
Seca4g10525 410 Pfam Zinc finger, ZZ type 308 348 IPR000433 GO:0008270
Seca4g10525 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 272 IPR013083 -
Seca4g10525 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Seca4g10525 410 Gene3D - 305 367 IPR043145 -
Seca4g10525 410 Pfam Zinc finger, C3HC4 type (RING finger) 25 69 - -
Seca4g10525 410 FunFam E3 ubiquitin-protein ligase PRT1 302 367 - -
Seca4g10525 410 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Seca4g10525 410 Pfam RING-type zinc-finger 205 229 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10525 Seca-Chr4 241160288 241168499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10525 11 66 C3H Transcription Factor Family AT1G74990 36.842 9.23e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10525 - - gmx:100787174 540.806