Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10517 ATGGTGTCAGGTTCAGGGGTCTGCGCGAAGAGAGTAGTGGTGAACGCGCGCCACCACATGCTTGGTCGTCTCGCTTCCATCGTAGCAAAGGAGCTGCTCAATGGACAGAAAGTGGTGCTCGTTAGGTGCGAAGAGATTTGCATCTTTGGTGGTTTGGTAAGGCAGAATATGAAGTACATGAGGTTCTTCCGCAAGCGCATGAACACCAAACCCTCCCATGGTCCCATTCACTTCCGTGCCCCTGCCAAGATATTCTGGCGCACTGTTCGTGGTTTCTTACTGTGGAAGGTTCTGAAATTTCTATTTGTTTATAGAATGATGCCACATAAGACTAAGTGTAGGGAAGCTGCACTTGCTCGATTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAGAATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGCCTGTTGGGCAGATTGTCATCTGAGGTTGGATGGAACTACTGTGACACCATCAGGGAGCTGGAAAAGAAGAGAAAGGAAAGGGCATATTTGGTTTACGAGAGAAAGAAACAGCTCAGCAAATTGAGGGTGAAAGCAGAGAAGGTTGCTGATGAGAAGCTTGGTTCCCAACTTGATATACTTGCTCCCGTTAAGTACTAA 663 0.4736 MVSGSGVCAKRVVVNARHHMLGRLASIVAKELLNGQKVVLVRCEEICIFGGLVRQNMKYMRFFRKRMNTKPSHGPIHFRAPAKIFWRTVRGFLLWKVLKFLFVYRMMPHKTKCREAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGRLSSEVGWNYCDTIRELEKKRKERAYLVYERKKQLSKLRVKAEKVADEKLGSQLDILAPVKY. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10517 220 SUPERFAMILY Ribosomal protein L13 12 168 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca4g10517 220 NCBIfam 50S ribosomal protein L13 12 168 IPR005755 GO:0003735|GO:0006412|GO:0015934
Seca4g10517 220 PANTHER RIBOSOMAL PROTEIN L13 2 202 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10517 220 Pfam Ribosomal protein L13 11 94 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10517 220 Gene3D - 170 220 - -
Seca4g10517 220 Gene3D Ribosomal protein L13 7 168 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca4g10517 220 FunFam 60S ribosomal protein L13a-4 8 168 - -
Seca4g10517 220 FunFam 60S ribosomal protein L13a 169 220 - -
Seca4g10517 220 Hamap 50S ribosomal protein L13 [rplM]. 11 149 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10517 Seca-Chr4 241067179 241068945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10517 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 80.909 7.44e-130 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10517 K02872 - gmx:100813340 367.466