Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10516 ATGGTGTCAGGTTCAGGGATCTGCGCGAAGAGGGTGGTCGTTGACGCCCGCCACCACATGCTTGGTCGTCTCGGTTCCATTGTAGCGAAGGAGCTTCTCAACGGACAGAAAGTCGTGCTGGTTCGTTGCGAGGAGATTTGCATCTCTGGTGGTTTGGTAAGGCAGAAGATGAAGTACATGAGATTCCTTCGCAAGCGCATGAACACCAAACCCTCCCATGGTCCCATCCACTTCCGTGCCCCTGCCAAGATCTTCTGGCGCACTGTTCGTGGAATGATACCACATAAGACTAAGCGTGGGGAAGCTGCACTTGCTCGATTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAGAATGGTTGTCCCTGATGCGCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGCCTGTTGGGCAGATTGTCATCTGAGGTTGGATGGAACTACTATGACACCATCAGGGAGCTGGAAAAGAAGAGAAAGGAAAGGGCACATTTGGTTTACGAGAGAAAGAAGCAGCTCAGCAAATTGAGGGTGAAAGCTGAGAAGGTTGCTGATGAGAAGCTTGGTTCCCAACTTGATGTCCTTGCCCCGGTTAAGTACTGA 621 0.5056 MVSGSGICAKRVVVDARHHMLGRLGSIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIRELEKKRKERAHLVYERKKQLSKLRVKAEKVADEKLGSQLDVLAPVKY. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10516 206 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Seca4g10516 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 FunFam 60S ribosomal protein L13a 155 206 - -
Seca4g10516 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 PANTHER RIBOSOMAL PROTEIN L13 1 188 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Seca4g10516 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca4g10516 206 Gene3D - 156 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10516 Seca-Chr4 241060891 241062563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10516 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 90.291 2.74e-141 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10516 K02872 - gmx:100813340 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10516 4 241060891 241062563 Seca4g10516 4 241060891 241062563 ECH