Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10514 ATGTCCCTTCCAAAACCCTCTGATGGTAAAGCCCCTCAGCAGGTGAAAGAAGGAGCACCAGCAACAGCAACAGCTTCATCCTCTTCTTCATGGAATATGCAAAACAGCCACAGAAATACTTTCCCCCCTTTAACTCTACAGATCAAAAGAAGCAAACTTGAAGATAGTGATGAAGATATGTTCACAGTTCCAGACGTGGAAGGCACACCAATTAGTGTTCATTCTGCAGTGACTCTTCCAAATAGTAACCTCAATCAAAGTAACGTCACAGATCCTCAATCTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGAGGAACAGGGTCTCTGCTCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGGGCTACAGAGTTGCAAGACAAAAATGCTATCTTAGAAGAGCGCATCTCAACTTTGATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCAAGGCCAAAAGTTGATGATAGCATTGAACAGAAGCAGGATCAGTTGAGTAAAAGCTAA 582 0.4416 MSLPKPSDGKAPQQVKEGAPATATASSSSSWNMQNSHRNTFPPLTLQIKRSKLEDSDEDMFTVPDVEGTPISVHSAVTLPNSNLNQSNVTDPQSQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRATELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSIEQKQDQLSKS. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10514 193 SUPERFAMILY Leucine zipper domain 114 173 IPR046347 GO:0003700|GO:0006355
Seca4g10514 193 Gene3D Single helix bin 133 174 - -
Seca4g10514 193 MobiDBLite consensus disorder prediction 19 46 - -
Seca4g10514 193 SMART brlzneu 110 174 IPR004827 GO:0003700|GO:0006355
Seca4g10514 193 MobiDBLite consensus disorder prediction 1 56 - -
Seca4g10514 193 MobiDBLite consensus disorder prediction 80 97 - -
Seca4g10514 193 CDD bZIP_HY5-like 124 165 - -
Seca4g10514 193 FunFam Transcription factor HY5 133 174 - -
Seca4g10514 193 Pfam bZIP transcription factor 111 170 IPR004827 GO:0003700|GO:0006355
Seca4g10514 193 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 112 175 IPR004827 GO:0003700|GO:0006355
Seca4g10514 193 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 18 189 IPR044280 GO:0000981|GO:0045944
Seca4g10514 193 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 117 132 IPR004827 GO:0003700|GO:0006355
Seca4g10514 193 MobiDBLite consensus disorder prediction 80 111 - -
Seca4g10514 193 Coils Coil 137 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10514 Seca-Chr4 241042328 241044628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10514 93 182 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.824 9.21e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g10514 bZIP_1 5.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10514 K16241 - gmx:100783826 308.531