Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10508 ATGGCCACAAACGACGCCGTTTCACCCACCAAGAAGCCCCAACCCATCCCTTGGACACACCAAGAGACGGTTAACCTCATCAGGGCTTACCAAGACAAGTGGTACTCCCTCAAGCGGGGCCCACTCCGTGCCAACCAGTGGGAAGAGGTCGCCGTCATCGTCGCCGCTAAATGCGGCTACGATTTCAACCACCCTTCCAAATCCGCCCTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCTGAAAAGCACCGCCTCTCCTCCTCCGCCGCCACCACATCCGTCACGCCCCGCGCCTGGCAATACTCGGGCCTCATGGACGAGCTGGAGCGCGGCCCACTCCCCATCTCGGCCCAACCCCTCGCTTCTTTGGCCCCTTTCGATGAAGATGATGATAACAATGACGACGAAAACGATGATGATGATGAGAGGGAGAACTATATTAAATCAAGGACAAGGAGTATCAATTATATTCTTAGCCAGAGTCAGAGACACACAAAAACCAAATATGAAGGGTTTTCAAGGGAGCGTGTTTGGGATTATGACAATCACGATGATGATGATGAAGAAGAAGAAGTGGTAGTGAGTGAGAGAGGGTTGGTTTCGGGCTTGACCGAAGAGATAAGATCTTTTACTGAGAGGATCATTGGGATGGAGAATTTGAAGATGGAGATGATGAAGGAAACTGAAAGGTTTAGGTTGGAGATGGAGAAAAAACGGATCCAGATGATTCTAGAATCACAACGGAGGGTTGTTGATTCAATTGCTAGGGCATTTGGATCTTCCAAGAGAATGAAGATTGGTCATCCAATCTGA 828 0.5085 MATNDAVSPTKKPQPIPWTHQETVNLIRAYQDKWYSLKRGPLRANQWEEVAVIVAAKCGYDFNHPSKSALQCRHKMEKLRQRHRAEKHRLSSSAATTSVTPRAWQYSGLMDELERGPLPISAQPLASLAPFDEDDDNNDDENDDDDERENYIKSRTRSINYILSQSQRHTKTKYEGFSRERVWDYDNHDDDDEEEEVVVSERGLVSGLTEEIRSFTERIIGMENLKMEMMKETERFRLEMEKKRIQMILESQRRVVDSIARAFGSSKRMKIGHPI. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10508 275 Gene3D - 18 85 - -
Seca4g10508 275 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 262 IPR044823 -
Seca4g10508 275 MobiDBLite consensus disorder prediction 132 147 - -
Seca4g10508 275 Pfam Myb/SANT-like DNA-binding domain 17 112 IPR044822 -
Seca4g10508 275 MobiDBLite consensus disorder prediction 127 151 - -
Seca4g10508 275 FunFam Trihelix transcription factor ASIL2 18 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10508 Seca-Chr4 240996704 240997531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10508 18 95 Trihelix Transcription Factor Family AT3G14180 28.205 4.07e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g10508 Myb_DNA-bind_4 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10508 - - adu:107474774 326.635