Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10505 ATGGAAGGTCGACGGAGGGTAACGCTTTATGATCAAATGACAGCTACTGAGACCAGCAGCCGTAACTCACTAGCAGGCTTGTTTCTAAACGACGTCGTATTATCTAGCCAGAAGACCGACGCCACAGCCGCCGTGAACTGCGAGTTGAGCCGGAATCGAACCCTCTCAGATATCATCCGAGAAGACGAACCTAACAACACAAAGGATCGTATGTCATGGAAAGCCTTCAAGGACAAGCTTCGGCTCAAAGCTTGGACCTCCTCGGTTCATATTCCCATTCCAATTCAGAACAATAATAACAACACAGACTTATCCCGATTCTCGGTCTCATCCCAAACACGTCTTGACTCGGATGAGTCGACTCAGCACAGCATGGCTCACCAACAGCCGAACGACATCGTTGAAGACCCTGACAGTTCAGATCTGGTCCAATTATCGCATCAGAGCTCCTCACGATTCGTGCCTCCGGTCGACGTTCCAATTGCCGGCGGCGATGAGGCTGCGGCGGCGGGGTTGGTGAGTGTGTCGCTGATGGATTTGTTAGAGGAGACTGAAGCGGATTTGGATCGAATGAGCGATGATGAGGATGGTGTGGATGAGTATCAGGAAGAACGAGAAGAAGAAGAGGAAAGGGAAGGGGAAAAAGAGAGTGTAGTGGAGTATAATTGCTGCGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATACCATGTGGCCACACGTTTTGCAGGAAGTGTTCCAGGGAGCTTTGGGTGAGTAGAGGGAATTGCCCTCTTTGCAATCATTTTATATTAGAAATTCTTGATATTTTTTGA 816 0.4914 MEGRRRVTLYDQMTATETSSRNSLAGLFLNDVVLSSQKTDATAAVNCELSRNRTLSDIIREDEPNNTKDRMSWKAFKDKLRLKAWTSSVHIPIPIQNNNNNTDLSRFSVSSQTRLDSDESTQHSMAHQQPNDIVEDPDSSDLVQLSHQSSSRFVPPVDVPIAGGDEAAAAGLVSVSLMDLLEETEADLDRMSDDEDGVDEYQEEREEEEEREGEKESVVEYNCCVCMVRHKGAAFIPCGHTFCRKCSRELWVSRGNCPLCNHFILEILDIF. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10505 271 Coils Coil 191 218 - -
Seca4g10505 271 MobiDBLite consensus disorder prediction 189 213 - -
Seca4g10505 271 PANTHER OS01G0917900 PROTEIN 4 271 - -
Seca4g10505 271 SUPERFAMILY RING/U-box 222 267 - -
Seca4g10505 271 Pfam Zinc finger, C3HC4 type (RING finger) 221 264 - -
Seca4g10505 271 MobiDBLite consensus disorder prediction 95 140 - -
Seca4g10505 271 CDD RING-HC 223 260 - -
Seca4g10505 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 271 IPR013083 -
Seca4g10505 271 SMART ring_2 223 260 IPR001841 -
Seca4g10505 271 ProSiteProfiles Zinc finger RING-type profile. 223 261 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10505 Seca-Chr4 240956858 240958415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10505 1 271 C3H Transcription Factor Family AT3G25030 36.042 3.62e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10505 - - gmx:100802736 241.891