Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10503 ATGGGTTTCCTAAATCATACTAATTATTTTTTGATTGCTCTGCTCATATTTTCCAGCTTCTTTTTGGGTTTGAGCTCTGTTATTGATACTATTACATCAACAAGATCCATCAGAGACAATGAGACAATAAGCTCAAACAACAGTGACTTCAAGCTAGGATTCTTCAGCCCTGAAAATTCCTCAAACCGCTATGTAGCAATCTGGTACATCTCTGAATCCTACATTATATGGATTGCTAATAGAGATCAACCTCTTAAGGATTCATCTGGGGTCTTCAAAATTCACAAGGATGGCAATCTTGTAATAATGAATGGACAAAATCATGTCATATGGTCAACAAATTTGTCAAGCACCACCAATTCAAGTGCTAAACTTGATGATTCAGGAAATTTGATCCTGAGAGATGTCACAAGTGGAGCTACAATATGGGACAGTTTCACACACCCTTGTGATGCAGCTGTGCCACAGATGAAAATTGGTGCTAACAGGGTCACAGGTAAGAAAATTGAGTACATATCAAGGAAAAGCAATTCTGATCCTTCTACTGGGTACTTCACAGGTAGTCTTGAACGTTTGGATGCTCCAGAAGTGTTTTTTTGGTTGAATAAAACTCAACCATATTGGAGAACTGGTCCATGGAATGGAAGGGTCTTCCTTGGAGCACCAAGGATGTTAACTGAGTATCTATTTGGATGGCGTTTAGATCATGATGATGATGGCACTGTTTATCTAACTTACAGTTTTGCTGACCCTTCTGCCTTTGGAATTCTCACCTTGACTCCACATGGCACACTAAAATTGGTAAGGTTTTTGAACAAAAAGGAAGTTTTGACACTTGAGGTGGATCAAAATGAGTGTGATTTTTATGGCAAATGTGGGCCATTTGGAAGCTGTGATAATTCAACCTTACCAATTTGCAGCTGTTTTAAGGGGTTTGAGCCCAGGAATTCTGATGAATGGAGCAGGAAAAATTGGACTAGTGGATGTGTGAGAAAGGCAGAGGCACCACTACAGTGTGAGAAGTTGAAAAATGGAAGTAATGTACAACAAGATGGGTTTTTGGTGTTTCATAATATGAAAGTACCAGACTTTGCAGAGAGATCAGATGGTAATCAAGACAAATGCGGAACAGATTGCTTAGCAAATTGTTCTTGTTTGGCATATGCATATGATTCTTATGTGGGGTGCATGTACTGGAGTAAAGACTTAATTGACTTGCAGAAGTTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTGCCAGCACAACTTCTCAAAAAGGAAAGAGGAAACAAGGCATTAATAATTATTGCTATTGCTGGGGGAATTGGAGCATTAACCTTTGCTATCTGTGCTTATCTTATGTGGCGGAAATATACTGCTAGGCCTACAGAAATGGCAAATATACAATCAGGAAGTCAGCCTCAAGACTTGATGATTGGAGACAATAGACAAATGAAATTGGATGAGCTACCACTATATGGTTTTGAAAAGCTTGCAATTGCAACAAACAACTTTCACTTAGCTAATAAGCTTGGGAAGGGAGGTTTTGGTACTGTATATAAGGGAGAATTGGATGATGGCCAAGAAATTGCTGTGAAAAGACTATCCAAAGCTTCTGGACAAGGATTAGAAGAATTCATGAATGAAGTGGTGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAGACTCCTTGGTTGTTGTGTTGAACGAGATGAACAAATATTAGTTTATGAGTTCATGCCAAATAAAAGCTTGGATGCATTTCTCTTTGATCCATTGCAAAAGAAAGTTTTAGATTGGAGAAAGCGCTTCAACATAATTGAAGGAATAGCTCGAGGTATACTTTATCTTCATAGAGACTCAAGACTAAGAATTATACATAGAGATCTTAAAGCAAGCAACATCTTACTTGATGGTGAGATGAATCCAAAAATATCAGACTTTGGTTTAGCTAGAATTTTCAAAGGTGGAGAAGATGATGAAGCTAACACAAGAAGGGTTGTTGGAACTTATGGTTATATGCCACCTGAATATGCAATGGAGGGGCTCTTCTCAGAGAAATCAGATGTCTATAGCTTTGGTGTCTTGCTTCTAGAGATTGTTAGTGGACGAAGAAACACTAGCTTTCATAACAATGAGGAGTCACTTAGCCTTGTTGGATTTGCATGGAAACTATGGATGGAAGAGAAAATTATATCTTTAATAGATCCAGAGATATGGGATCCATGCTTTGAAAGTAGCATGTTGAGGTGCATACACATAGGGCTCCTATGTGTCCAAGAACTTCCAAAAGAAAGACCAACTATAGCCACTGTAGTTTTAATGCTCATAAGTGAGATTACACATCTTCCTCCTCCAAGGCAAGTTGCATTTGTCCAAAAGCAAAAGTATCAAAGTTCAGAGTCTTCACAAAAAAGTCAATTTAGCTCAAATAACAATGTAACTCTAAGTGAAATCCAGGGCAGGTAA 2475 0.383 MGFLNHTNYFLIALLIFSSFFLGLSSVIDTITSTRSIRDNETISSNNSDFKLGFFSPENSSNRYVAIWYISESYIIWIANRDQPLKDSSGVFKIHKDGNLVIMNGQNHVIWSTNLSSTTNSSAKLDDSGNLILRDVTSGATIWDSFTHPCDAAVPQMKIGANRVTGKKIEYISRKSNSDPSTGYFTGSLERLDAPEVFFWLNKTQPYWRTGPWNGRVFLGAPRMLTEYLFGWRLDHDDDGTVYLTYSFADPSAFGILTLTPHGTLKLVRFLNKKEVLTLEVDQNECDFYGKCGPFGSCDNSTLPICSCFKGFEPRNSDEWSRKNWTSGCVRKAEAPLQCEKLKNGSNVQQDGFLVFHNMKVPDFAERSDGNQDKCGTDCLANCSCLAYAYDSYVGCMYWSKDLIDLQKFPYGGVDLFIRVPAQLLKKERGNKALIIIAIAGGIGALTFAICAYLMWRKYTARPTEMANIQSGSQPQDLMIGDNRQMKLDELPLYGFEKLAIATNNFHLANKLGKGGFGTVYKGELDDGQEIAVKRLSKASGQGLEEFMNEVVVISKLQHRNLVRLLGCCVERDEQILVYEFMPNKSLDAFLFDPLQKKVLDWRKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGEMNPKISDFGLARIFKGGEDDEANTRRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFHNNEESLSLVGFAWKLWMEEKIISLIDPEIWDPCFESSMLRCIHIGLLCVQELPKERPTIATVVLMLISEITHLPPPRQVAFVQKQKYQSSESSQKSQFSSNNNVTLSEIQGR. 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10503 824 Pfam D-mannose binding lectin 75 175 IPR001480 -
Seca4g10503 824 Pfam PAN-like domain 348 406 IPR003609 -
Seca4g10503 824 Gene3D - 24 148 IPR036426 -
Seca4g10503 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 786 - -
Seca4g10503 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 146 - -
Seca4g10503 824 SMART ntp_6 348 420 IPR003609 -
Seca4g10503 824 Gene3D Transferase(Phosphotransferase) domain 1 582 786 - -
Seca4g10503 824 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10503 824 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
Seca4g10503 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 769 - -
Seca4g10503 824 SUPERFAMILY Protein kinase-like (PK-like) 491 805 IPR011009 -
Seca4g10503 824 CDD STKc_IRAK 512 778 - -
Seca4g10503 824 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Seca4g10503 824 CDD B_lectin 34 149 IPR001480 -
Seca4g10503 824 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Seca4g10503 824 Pfam Protein tyrosine and serine/threonine kinase 507 776 IPR001245 GO:0004672|GO:0006468
Seca4g10503 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 215 IPR036426 -
Seca4g10503 824 FunFam receptor-like serine/threonine-protein kinase SD1-8 480 581 - -
Seca4g10503 824 PIRSF SRK 2 824 IPR024171 GO:0004674
Seca4g10503 824 SMART blect_4 34 149 IPR001480 -
Seca4g10503 824 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Seca4g10503 824 Gene3D Phosphorylase Kinase; domain 1 481 581 - -
Seca4g10503 824 ProSiteProfiles Bulb-type lectin domain profile. 28 146 IPR001480 -
Seca4g10503 824 CDD PAN_AP_plant 336 421 - -
Seca4g10503 824 MobiDBLite consensus disorder prediction 801 824 - -
Seca4g10503 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Seca4g10503 824 SMART serkin_6 506 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10503 Seca-Chr4 240936122 240940560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10503 494 824 Receptor kinase-like Gene Family AT4G11530 56.805 1.36e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g10503 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10503 - - ccaj:109790907 1295.03