Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10491 ATGTTTAGATTGGATTGTTCAACTTTGATCTTGCTGATACTCCAAGCTTTTGGGCTTCATTTTTTGTGTTTTTGTTTCTTTGTTGTCTTGCTTAAGCTGAAATTGTTATCTTTAGCTTTCCTTATCTATAAGATATTTTGTCGCAGATGCTCAGTATGCCTTTTAGACTACCAACCAGAGGATAGACTTCAACAGATACATGCATGTGGCCATACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCAACCACAACACCTGCCCTCTTTGCCGCTTGTCCCTACTAACTACTGCTAAATCTTCAACAAAGTCTCTTAATAGATTGGCAATATGA 336 0.378 MFRLDCSTLILLILQAFGLHFLCFCFFVVLLKLKLLSLAFLIYKIFCRRCSVCLLDYQPEDRLQQIHACGHTFHMSCIDLWLANHNTCPLCRLSLLTTAKSSTKSLNRLAI. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10491 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 101 IPR013083 -
Seca4g10491 111 SUPERFAMILY RING/U-box 49 97 - -
Seca4g10491 111 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Seca4g10491 111 PANTHER OS11G0150450 PROTEIN 49 101 - -
Seca4g10491 111 SMART ring_2 50 91 IPR001841 -
Seca4g10491 111 Pfam Ring finger domain 49 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10491 Seca-Chr4 240789875 240790216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10491 38 96 C3H Transcription Factor Family AT4G10160 61.905 4.03e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10491 K19039 - gmx:100794211 104.76