Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10445 GCGTCCAGCAACCGGCGCTGTGCGACGGCGGCCAGCAGAGAGCGCACGGTGGCGGCCAGCAGAGAGCGCGCTGCGACGGCGGGGGATAAACGCGGTGGTGCGCTGCTGCCCTCCTTCGATCTCCCTCTGTCCGGTGCTCTTTTGACGGGAACCATTTCACTTGCATTTGCCAATTTAACTAATTTGAGGAACCTGTATCTGAATGATAACGATTTGAGTGGTTCGATACCTGAGAGCTTGACTAATTTGGCTCAACTTGAGGTTCTGGATGTGACTAATAACAACCTATCTGGTGAGGTTCCCAAATTCTCAGCTAAGTTACAAGTGGGGCAAGCCACTAGATTGGGGCAAGCTCCAATCTATTGCATTGCATTCTCTTCACAGAGTATTCTTACATTGTTTTTCTTAATTCGCATCACGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCATCAAACCATGCCAAGTCTTACCTATATGCCATCCTCATCAGAACAGGACTGGTAGTTTCTACCCTGCTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTGATGTCATTGATGGGATCATTACTTACAATGCTTGTTGACACAGAGATCATAGATCAGATCGACAGAGATGTAAAACGCACTCATCCTGATATGCACTTTTTCTCTGTTGATTCTCAATTTTCAAAATTAATCACTAACTCTTATGTATCAGGGAATGGGAATTTTGTTATTTGGGATCTTTGGAATTTTGTATTGATAGTAAACTTACTAAGAAATGATGTAGGAAAATTTGGAGCTGTGTTTTCTTTGCCTATGCTGGTATGCATACTCAACTCAAGAGAGGCAGCCTATAAATTACATTCCTGA 879 0.4403 ASSNRRCATAASRERTVAASRERAATAGDKRGGALLPSFDLPLSGALLTGTISLAFANLTNLRNLYLNDNDLSGSIPESLTNLAQLEVLDVTNNNLSGEVPKFSAKLQVGQATRLGQAPIYCIAFSSQSILTLFFLIRITYALTISPVAMSLEELIPSNHAKSYLYAILIRTGLVVSTLLIGLSVPFFGLVMSLMGSLLTMLVDTEIIDQIDRDVKRTHPDMHFFSVDSQFSKLITNSYVSGNGNFVIWDLWNFVLIVNLLRNDVGKFGAVFSLPMLVCILNSREAAYKLHS. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10445 292 PANTHER OSJNBA0070M12.3 PROTEIN 44 263 - -
Seca4g10445 292 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 157 231 IPR035969 -
Seca4g10445 292 Pfam Leucine Rich Repeat 61 83 IPR001611 GO:0005515
Seca4g10445 292 FunFam Leucine-rich repeat receptor-like kinase 38 117 - -
Seca4g10445 292 Gene3D Ribonuclease Inhibitor 21 116 IPR032675 -
Seca4g10445 292 MobiDBLite consensus disorder prediction 1 25 - -
Seca4g10445 292 SUPERFAMILY L domain-like 41 130 - -
Seca4g10445 292 Pfam Transmembrane amino acid transporter protein 135 201 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10445 Seca-Chr4 240140841 240142543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10445 131 206 Amino Acid or Auxin Permease AAAP Family AT3G54830 60.256 9.41e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10445 K15015 - gmx:100775840 113.62