Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10428 ATGGAAAGATATAAAATTTTGAGAGAGCTTGGAGATGGTTCTTGCGGTCACGTATATAAAGCCCGCGATATGAGAACTTATGAGATTGTTGCTGTCAAAAGGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACTCAAATTTAAGAGAAGTTAAGGCCCTCCGCAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAAAGAAAATAATGAACTGTTTTTCATTTTTGAATACATGGATTGTAATCTTTATCATTTAATAAAAGAGAGAGAAAAGCCCTTTTCAGAGGAAGAGATACGGTGCTTTATGAAGCAAGTGCTTCAAGGGCTTAGTCATGTGCACAAGAAAGGATTCTTTCATAGAGATTTAAAACCTGAAAATTTGCTAGTGACAAATGATGTTCTTAAAATTGCTGATTTTGGATTGGCTAGAGAAGTATCATCGATGCCTCCGTATACTCAATATGTTTCCACACGGTGGTACCGAGCTCCAGAAGTTTTGTTGCAGTCCCCATGTTATACTCCTGCTGTTGACATGTGGGCTGTTGGTGCTATATTAGCAGAGCTTTTTACTTTGACCCCCATATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATACCGCGTTCTTGGTATGCCAGATTTATCTGCTTTCACCATAGGGGCAAACGACTCTCGGCTATTGGACCTTGTTGGTCATGAAGTTATTCCACCTATGAAGCTTTCTGATATCATGCCAAATGCTAGCTTGGAAGCTATAGATTTGATCACACAACTGTTATCATGGGACCCATCAAGAAGGCCAGATGCAGATCAGTCACTGCAACATCCTTTTTTCCATGTGGATAGATGGGTTCCTTGTCCGCTCAATGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTTGAGCTCAAACTGCAGGATTTTGGTCCAGATCCCGATGATTGTTTTCTTGGCTTGACATTAGCTGTAAAGCCCAGTGTTTCAAACTTGGATGTGGTCCAAAATGCATCTCAGGGTATGAGAGAGAATGTGCTATTTTGCTCAGATTTTAATGAACATTCAGACCAATCAGGTGATTCTTAG 1113 0.3962 MERYKILRELGDGSCGHVYKARDMRTYEIVAVKRLKRKFCFWEEYSNLREVKALRKMNHPNIIKLKEVVKENNELFFIFEYMDCNLYHLIKEREKPFSEEEIRCFMKQVLQGLSHVHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLQSPCYTPAVDMWAVGAILAELFTLTPIFPGESEIDQLYKIYRVLGMPDLSAFTIGANDSRLLDLVGHEVIPPMKLSDIMPNASLEAIDLITQLLSWDPSRRPDADQSLQHPFFHVDRWVPCPLNDPLELKLSSKRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSVSNLDVVQNASQGMRENVLFCSDFNEHSDQSGDS. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10428 370 Gene3D Transferase(Phosphotransferase) domain 1 82 284 - -
Seca4g10428 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 303 - -
Seca4g10428 370 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10428 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca4g10428 370 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Seca4g10428 370 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10428 370 CDD STKc_MAK_like 4 284 - -
Seca4g10428 370 FunFam Probable serine/threonine-protein kinase DDB_G0268078 83 291 - -
Seca4g10428 370 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Seca4g10428 370 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10428 370 SUPERFAMILY Protein kinase-like (PK-like) 1 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10428 Seca-Chr4 239907605 239918694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10428 7 284 MAP Kinase Gene Family AT4G01370 39.298 2.36e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Seca4g10428 Pkinase 2.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10428 K08829 K08830 gmx:100792842 700.664