Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10418 ATGGACGAAGATTTCGAGATGCCAGTGGTGGAGGATCCAATGAACGAGGACTTCGACTTCGCCGGCGGTGACAATGACAACCCCATTCTCAAGGTTGGCGAGGAGAAGGAGATTGGAAAGCAGGGATTGAAGAAGAAGCTCCTCAAGGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGATGAAGTTCAAGTTCACTATGCTGGGACGTTGCTTGATGGCACCAAGTTTGATTCCAGCAGAGATAGGGGAACTCCATTCAACTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGAATTAAAACCATGAAGAAAGGTGAAAATGCCCTTTTCACTATCCCACCTGAGTTAGCTTATGGTGAATCCGGTTCTCCTCCAACTATTCCTCCCAATGCTACTCTCCAGTTTGATGTTGAGCTTCTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGAGGTTTGTTTAAGAAGATACTCAAGGAGGGGGAGAAATGGGAGAACCCCAAGGATCCTGACGAAGTTTTAGTCAAGTATGAGGCATGTCTTGATGATGGTACGCTTGTATCAAAATCTGATGGAGTGGAGTTTACAGTCAAAGAGGGTCATTTTTGCCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACTGTGAAACCACAATATGGATTTGGCGAGAAGGGCAAGCCAGCGCATGGTGGTGAAGGAGCAGTTCCACCGAATGCCACATTGCAGATTACTCTCGAGTTAGTTTCTTGGAAGACTGTTTCAGAAGTGACTGATGACAAGAAGGTCATTAAAAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCGAATGAGGGAGCCATTGTGAAGTTGAAACTAATCGGGAAGCTGAAGGATGGTACTGTCTTTTTGAAAAAGGGTCATGATGATGAAGGGGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTGATTGATGGGCTTGATAGGGCTGTGTTGACTATGAAGAAGGGTGAGGTAGCATCGTTGATTATAGCACCTGAGTATGCTTTTGGTTCATCAGAGTCCCAGCAGGAATTGGCAGTGATTCCTCCTAATTCCACTGTGTATTATGAGGTTGAGCTAGTATCATTTGAGAAGGACAAGGAATCCTGGGACATGAACACTCCAGAGAAGATAGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCGTTGTTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCTATAAAGTTCATAGAGTATGACTCTTCCTTTAGTGAAGAGGAGAAGAAGAGCGCCAAGGCTTTGAAAGTTGCCTGCAATCTGAACAATGCAGCATGCAAATTGAAGTTGAAAGATTATAAACAAGCAGAGAAATTGTGTACTAAGGTGCTGGAACTTGAGGGCACAAACGTGAAGGCCCTTTATAGAAGGGCCCAGGCATATATCCAGTTGGCTGACTTAGATTTAGCTGAATTTGATATCAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTCAAGCTGGAGTACAAGACTTTGAAGGAAAAGCAGAAGGAGTACAATAAAAAGGACGCAAAATTTTATGGAAATATGTTCAGTAAAATGAATAAGCTTGAGTCTCTTGACAGTAATAAATCAGCACCCAAGGATGCTCAACCCATGAGTATTGACAGCAAGGCATAA 1731 0.4356 MDEDFEMPVVEDPMNEDFDFAGGDNDNPILKVGEEKEIGKQGLKKKLLKEGEGWDTPEAGDEVQVHYAGTLLDGTKFDSSRDRGTPFNFTLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKILKEGEKWENPKDPDEVLVKYEACLDDGTLVSKSDGVEFTVKEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGGEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKLKLIGKLKDGTVFLKKGHDDEGELFEFKTDEEQVIDGLDRAVLTMKKGEVASLIIAPEYAFGSSESQQELAVIPPNSTVYYEVELVSFEKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYARASKRYEKAIKFIEYDSSFSEEEKKSAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLELEGTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRDVKLEYKTLKEKQKEYNKKDAKFYGNMFSKMNKLESLDSNKSAPKDAQPMSIDSKA. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10418 576 SUPERFAMILY FKBP-like 37 153 - -
Seca4g10418 576 Coils Coil 519 539 - -
Seca4g10418 576 Gene3D - 35 150 IPR046357 GO:0003755
Seca4g10418 576 FunFam Peptidylprolyl isomerase 266 388 - -
Seca4g10418 576 SUPERFAMILY FKBP-like 152 268 - -
Seca4g10418 576 FunFam Peptidylprolyl isomerase 33 151 - -
Seca4g10418 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 60 148 IPR001179 GO:0003755
Seca4g10418 576 FunFam Peptidylprolyl isomerase 152 265 - -
Seca4g10418 576 SUPERFAMILY FKBP-like 270 403 - -
Seca4g10418 576 MobiDBLite consensus disorder prediction 555 576 - -
Seca4g10418 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 176 265 IPR001179 GO:0003755
Seca4g10418 576 Pfam Tetratricopeptide repeat 486 519 IPR001440 GO:0005515
Seca4g10418 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 386 IPR001179 GO:0003755
Seca4g10418 576 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Seca4g10418 576 SMART tpr_5 452 485 IPR019734 GO:0005515
Seca4g10418 576 SMART tpr_5 403 436 IPR019734 GO:0005515
Seca4g10418 576 SMART tpr_5 486 519 IPR019734 GO:0005515
Seca4g10418 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 56 145 IPR001179 GO:0003755
Seca4g10418 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 287 383 IPR001179 GO:0003755
Seca4g10418 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 171 262 IPR001179 GO:0003755
Seca4g10418 576 Gene3D - 266 388 IPR046357 GO:0003755
Seca4g10418 576 Gene3D Tetratricopeptide repeat domain 389 546 IPR011990 GO:0005515
Seca4g10418 576 FunFam Peptidylprolyl isomerase 391 546 - -
Seca4g10418 576 SUPERFAMILY TPR-like 392 552 IPR011990 GO:0005515
Seca4g10418 576 Gene3D - 151 265 IPR046357 GO:0003755
Seca4g10418 576 PANTHER PEPTIDYLPROLYL ISOMERASE 35 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10418 Seca-Chr4 239830126 239835688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10418 1 560 Calmodulin-binding Proteins AT3G25230 80.000 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10418 K09571 - gmx:100794411 1001.5