Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10414 ATGGAAAACCAGTTCTTTTTGAATGCTGGGGTGTCTCATCCCTTGCACTTTGAACCTTCACCTAATTCCTCAATGCCCACTTGGCAATCACTCTCCTCACCCATGGAAATTCAACCAACAGTTCTCAATTGTTCCTCTGAGCAAACTCAAGATTGTTTTTACAACCCCACATGGGACAAGTCAACGGATCATCATGGTCTTCAATTTGATTCTGCACTGAGTTCAATGGTTTCATCCCCTGCAGCATCCAATAACCCCAACATGTCCAATGAGAATTTTGTGATGAGGGAATTGATAGGAAAATTAGGAGCTGTTGGAAACTCTGATGAGATCTCACCACATTCTCAGCCTTTGGTTGTTGCTTCTTCTTACATGAATGGTGGGAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGCTCAACATTGCCCCAATGATGAACCATTTGGTGAAAGAGAATTTGCCTAAACCAATGGCTCTCAATTCTAGTGTGGCAGAATTCTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGGAGCAGGAGTTTCAATGATAGGAGTAGCCAATTGGTTGTGAACAATGGTGAATTAGCCCAGAGATCTGCACCAGTTATGGAAAATGGGAAGCTACTAACAAGAGTCTCAAGTAGTCCATCACTCAAGACATTTGGATCTCAAATTGAGAACAAGAATAGTCCATTACAGGATCAAGATAGAATGGAAGTGGCAAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGGAAATAGGTGTGAAAACTTCCCTTGATATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAGCTTCAAACACTACCAAGGTGAAGCACTTTTTTAAAGGTGTTGAAGGTAGTGGAGAAGACTCAAATGCAAAGCGTAGCAAGGCAAATGAAAATGGCACAATGAAGGTTGAGGAAGAGTCCAAAGGAGGTACTACTAATGCAGGGGAAGAGAAACAGAACAAAGGTAACACTAACTCTAAACCTCCTGAGCCACCAAAAGATTACATTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGTCTTGCAGAACGTGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGTAAGGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTCCTATCTATGAAATTGGCATCTGTTAACACAAGGATGGATTTTAGTATTGAGAGTCTTATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCAAACCCAATATTCCCTTTAGATTCCTCAGCACCAGCCTTTTATGGTCACCAGCCACAGCAAAACCCAGCTATCCATAATAACATTCCTAATAGAACCATGTCCCACACCTCAGTGGACCCATTAGATTCTTCTTTGATCCAAAATCTTGGCATGCATTTACCTCCCTTAAATGGGTTTAGTGAAGGTTCCTCTCAGTATCCATTAACATTCTGTGAAGATGACCTCCACACAATTGTTCAGATGGGATTTGGCCAAACTACAAACAGGAAAACACCAACACAGTCTCCAAGCTTCAACGGTTCAAATCAAGTACCACAAATGAAAGTTGAGCTTTGA 1716 0.4143 MENQFFLNAGVSHPLHFEPSPNSSMPTWQSLSSPMEIQPTVLNCSSEQTQDCFYNPTWDKSTDHHGLQFDSALSSMVSSPAASNNPNMSNENFVMRELIGKLGAVGNSDEISPHSQPLVVASSYMNGGNNSTNTSCYSTPLSSPPKLNIAPMMNHLVKENLPKPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSSQLVVNNGELAQRSAPVMENGKLLTRVSSSPSLKTFGSQIENKNSPLQDQDRMEVANSQEESTISEQTPNGEIGVKTSLDMNSRKRKASSKGKAKEASNTTKVKHFFKGVEGSGEDSNAKRSKANENGTMKVEEESKGGTTNAGEEKQNKGNTNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDFSIESLISKDIFQSNNSLANPIFPLDSSAPAFYGHQPQQNPAIHNNIPNRTMSHTSVDPLDSSLIQNLGMHLPPLNGFSEGSSQYPLTFCEDDLHTIVQMGFGQTTNRKTPTQSPSFNGSNQVPQMKVEL. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10414 571 MobiDBLite consensus disorder prediction 546 571 - -
Seca4g10414 571 MobiDBLite consensus disorder prediction 296 340 - -
Seca4g10414 571 SMART finulus 378 428 IPR011598 GO:0046983
Seca4g10414 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 441 IPR036638 GO:0046983
Seca4g10414 571 Coils Coil 419 439 - -
Seca4g10414 571 MobiDBLite consensus disorder prediction 341 355 - -
Seca4g10414 571 FunFam Basic helix-loop-helix transcription factor 369 441 - -
Seca4g10414 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 422 IPR011598 GO:0046983
Seca4g10414 571 MobiDBLite consensus disorder prediction 231 276 - -
Seca4g10414 571 Gene3D - 369 443 IPR036638 GO:0046983
Seca4g10414 571 Pfam Helix-loop-helix DNA-binding domain 376 423 IPR011598 GO:0046983
Seca4g10414 571 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 255 486 IPR024097 GO:0006355
Seca4g10414 571 MobiDBLite consensus disorder prediction 231 363 - -
Seca4g10414 571 CDD bHLH_AtBPE_like 362 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10414 Seca-Chr4 239735301 239738078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10414 1 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.820 5.49e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10414 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10414 - - gmx:100801233 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10414 4 239735301 239738078 Seca4g10414 4 239735301 239738078 PCT