Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10411 ATGCTTCGTGTTGTTTCAACTGGGTCAAATCTTTTTCGGTCTCTTACATACACCCCAGTTATAAGAGCTTTGCAAGTTTTCACTTCTGCCACCTATTCGACCAATGTCCTAGCCCAAGCTAAGGTTGAAGTGCAAGAATTTAGTAACCAATGGAAGGATGCTACTGAAGTTTTGAGTAAATGGGGTTGTAGTGATGATGATTTGATGAGAATATTTACCCGTTGCCCCTCATTGCGCAATGCTGATCCTACTCAGGTTCAATCTAAACTATGCCTGTTGAGTGGATTGGGGTTAGGGGCATCTGAACTTGTGAAGATCATCAATTGCAGGCCTCGATTTTTCAGGTCTCAGCTTAAAGGTAGCTTTGACCAGAGGATTGCCCATCTAATGTCATTGTTTGAGTCAAAAGAGGTGCTTCATAAGGCCATTGTGAGAAATCCTTCACTGTTGTTATGTGACAATCGCAATGACATGAAAGCTATTGTTGTGCTGTATGATGAGTTAGGTGTTCAGAAAAGGGACTTGATTCAGATGCTGCTTTTGCGGCCAACAATCATTTCAAGGACTTCCTTTGATGATGAGAAGCTGGAATATATAAACAGGGTAGGGCTTTCCAAGGATTCAAAGATGTATAAATATGTGGTGACACTAATAGGTATCTCTAGAGTGGAAACAATTCGGGATAAAGTAGCGAATTTCACAAGGTTTGGTTTCTCTGAGGATGAGATATTTGGCCTTTTTGGGAAGTCTCCTCATGTTTTGACATTGTCAACTGATAAGGTTCAGAGGAACATGACTTTCATTTTGGGCACAATGAAACTTGAGGCTAAGATAATCCTGAAGTACCCATATCTCTTGTATGCCAATGTGGATACTGTTTTGAAGCCACGAGTGCTTCTGGCAACGAAGATACTAGAATTGGATTCCAATTTGCAAATCAAGGGACCTGGAATATTTAGGGCACTGAGGATGTCAGAGGAGAGGTTTCTAAATACGTATGTCAAATGCCATGACAAGGAAACTGCTAATGAATTAATGGAATTCTATAAAAGGACAAAAGAGGTGAAGAGATTAGCAGAGTCATCAAGGAAGTACATCAGTAGAGGATTCCCCTTCTGA 1119 0.4066 MLRVVSTGSNLFRSLTYTPVIRALQVFTSATYSTNVLAQAKVEVQEFSNQWKDATEVLSKWGCSDDDLMRIFTRCPSLRNADPTQVQSKLCLLSGLGLGASELVKIINCRPRFFRSQLKGSFDQRIAHLMSLFESKEVLHKAIVRNPSLLLCDNRNDMKAIVVLYDELGVQKRDLIQMLLLRPTIISRTSFDDEKLEYINRVGLSKDSKMYKYVVTLIGISRVETIRDKVANFTRFGFSEDEIFGLFGKSPHVLTLSTDKVQRNMTFILGTMKLEAKIILKYPYLLYANVDTVLKPRVLLATKILELDSNLQIKGPGIFRALRMSEERFLNTYVKCHDKETANELMEFYKRTKEVKRLAESSRKYISRGFPF. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10411 372 PANTHER CGI-12 PROTEIN-RELATED 37 338 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 FunFam Mitochondrial transcription termination factor family protein 122 343 - -
Seca4g10411 372 Gene3D Transcription termination factor 3, mitochondrial 134 350 IPR038538 -
Seca4g10411 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 Pfam mTERF 56 185 IPR003690 GO:0003690|GO:0006355
Seca4g10411 372 Pfam mTERF 165 330 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10411 Seca-Chr4 239656359 239658417 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g10411 mTERF 6.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10411 K15032 - gmx:100799629 520.005