Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10410 ATGGCTTCTTCATCCAAACCCCAATGGATCTACGACGTTTTCATCAGTTTCAGGGGAGAAGACGCTCGTGAGAAATTCGTTCGTGATCTCTATGTTGCGCTCTCAAATGCGGGAATCAACGCTTTCCTGGACGATGAGGAGCTCGAAAAGGGACAGGAGCTGAAACCAGAACTATTGCGAGCAATAGAAGGCTCTCAGATGTCTTTAGTTGTTCTCTCTCAGAACTATAGCGGATCTAGTTGGTGTCTTGATGAACTGCTAAAAATCATGGAATGCCGCACAGCTTACGGCCAGCTGGTTTGCCCCATATTTTACGGCGTTGAACCATCGGAGGGGTATGAACGTGAACTGCTGGAGGGAATTGTTGGGTACATTTTGACTAAAATAAGCCACCCATTGCCTATTACTGATTTTCCAGTTGGATTAGAATACCGTGTGGAACAAGTGATTCGGTTTATTCAAAATCGATATAGCAACGTTTGTTGTAAAATAGGGATATGGGGAATGGGGGGATCGGGTAAAACAACCATAGCCAAAGCCATCTACAATCAAATTCATCCTCAATTTGTGTATAGAAAATTCATTGAAAATATTAGACAGGTTTGTGAAGAAGAAGAAGATAGAGGGCATATTCATTTACAAGAACAACTTCTTTCACATGTCCTTAAACCAATGGAGAAGATACATAGCATTGCCATGGGGACAACTATGATAGAGAATAAACTTGCTGGAAGAAGGACAATCATTGTACTTGATGATGTGACCACATTTCAGCAAGTAAAAGTCTTGGGTGGAAATTGTAAATGGTTTGGTCCATCAAGTGTATTAATTGTTACAACCAGAAATGTACGCCTTCTTAATTTACTTAAAGTTGACCATGTCTGCAAAATGAAGGAAATGGACCAGAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAAGCAAGTCCAATAGAAGACTTCAGGGAACTCTCAAAAAATGTAGCTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATTTGACAGGACAAAGCAAGAATGGAAAAGTGTATTGTCAAAACTGGAGAGAATTCCCAATGATCAAGTGCATGAGAAATTGAGAATAAGCTATGATGGTTTGGATGATATGGAAAAAGATATATTTCTTGACATATGCTTTTTCTTCATTGGTAAGGACAGAGCCTATGTTACAGAGATATTAAATGGATGTGAATTTTATGCTGATATTGGAATTACAGTACTCATAGAGCGGAGCCTCATAAAAGTTGAACAGAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATTGTTCGTCAAAGTTCAACAAAAGAGCCTGGGAAGTGCAGTCGATTGTGGTGTCCCAAGGATGTACATGATGTTTTGACAAAAAATACTATGCTGGAGAAGCTGAAAATCCTCAATCTCAGTCATTCTAGGTACTTGAAAAACACCCCGGACTTTTCCAAACTACCAAATCTAGAAAAACTCATTCTGAAGGACTGTCCAAATTTGTCCGAGGTACACGAGTCCATTGGAGATCTCAAAAATCTTATTTTGATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATCAGTTGAAATCTGTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGATATAGAGCAGATGGAATCCTTGACAACACTGATTGCAGAAGGATTGGCTCGTGATGTTTTTACTTCTCTCCTTTGGTCTTGGATGTCACCAACAATGAATCCCATGTCCCATAGTCCTTTATTTGGGAGCATGTCATCGTCTCTTGCTTTCATGGATGTACAAAATAATAATTTGGATCATCTTTCCCCAATGATTAGTGGCCTTTCAAAACTTCAAACTGTTTGGGTGCAATGTGACACAGAGTTTCAACTATCTGAACAATTACTGAAAATTCTGGATGATGCAAATTATGATGGGAATTATGTTTCTGATTTGCCATCAACATCGCATGCAATAGCATCACAGACGTTGAGGTTTCAATGGATTGGAATAGGAAGTTACCATAAAGTCCTCGATGCTCTTAGCAACAACACATCAGAGGGAATGATTCTGTGTGTTGTTTATTCATCAACCACTGGAAACTTGGCAGACGATTTTCTTATCAGCGTCTTGATTGTTAATTACACAAAGTGCACCATCCAGATATACAAGAGAGACACAACAATTTCCTTTAATGAAGAAGATTGGCAGGGCATAATATCTAATCTAGGACATGAAGACAAAGTGGAGATTTATGTTGTTTATGGGCAAAGACTGACTGTCATGAAGACAGTTGTATATCTAATACATGATAAATCAATTAATGTGGAAACGGAGCCACCAAAGAAAAAGCTTCGAATAGACTCATAA 2445 0.391 MASSSKPQWIYDVFISFRGEDAREKFVRDLYVALSNAGINAFLDDEELEKGQELKPELLRAIEGSQMSLVVLSQNYSGSSWCLDELLKIMECRTAYGQLVCPIFYGVEPSEGYERELLEGIVGYILTKISHPLPITDFPVGLEYRVEQVIRFIQNRYSNVCCKIGIWGMGGSGKTTIAKAIYNQIHPQFVYRKFIENIRQVCEEEEDRGHIHLQEQLLSHVLKPMEKIHSIAMGTTMIENKLAGRRTIIVLDDVTTFQQVKVLGGNCKWFGPSSVLIVTTRNVRLLNLLKVDHVCKMKEMDQNESLELFSWHAFREASPIEDFRELSKNVAAYCGGLPLALEVLGSYLFDRTKQEWKSVLSKLERIPNDQVHEKLRISYDGLDDMEKDIFLDICFFFIGKDRAYVTEILNGCEFYADIGITVLIERSLIKVEQKNKLGMHDLLRDMGREIVRQSSTKEPGKCSRLWCPKDVHDVLTKNTMLEKLKILNLSHSRYLKNTPDFSKLPNLEKLILKDCPNLSEVHESIGDLKNLILINLKDCTSLSNLPRKIYQLKSVKTLILSGCSKIDKLEEDIEQMESLTTLIAEGLARDVFTSLLWSWMSPTMNPMSHSPLFGSMSSSLAFMDVQNNNLDHLSPMISGLSKLQTVWVQCDTEFQLSEQLLKILDDANYDGNYVSDLPSTSHAIASQTLRFQWIGIGSYHKVLDALSNNTSEGMILCVVYSSTTGNLADDFLISVLIVNYTKCTIQIYKRDTTISFNEEDWQGIISNLGHEDKVEIYVVYGQRLTVMKTVVYLIHDKSINVETEPPKKKLRIDS. 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10410 814 Gene3D - 299 383 IPR042197 -
Seca4g10410 814 ProSiteProfiles TIR domain profile. 9 129 IPR000157 GO:0007165
Seca4g10410 814 Gene3D - 127 294 IPR027417 -
Seca4g10410 814 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 483 604 IPR044974 GO:0006952
Seca4g10410 814 FunFam Disease resistance protein (TIR-NBS-LRR class) 301 383 - -
Seca4g10410 814 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 111 IPR035897 -
Seca4g10410 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 393 IPR027417 -
Seca4g10410 814 Pfam TIR domain 11 111 IPR000157 GO:0007165
Seca4g10410 814 PRINTS Disease resistance protein signature 334 348 - -
Seca4g10410 814 PRINTS Disease resistance protein signature 479 495 - -
Seca4g10410 814 PRINTS Disease resistance protein signature 241 255 - -
Seca4g10410 814 PRINTS Disease resistance protein signature 163 178 - -
Seca4g10410 814 Pfam NB-ARC domain 143 372 IPR002182 GO:0043531
Seca4g10410 814 Gene3D Ribonuclease Inhibitor 467 712 IPR032675 -
Seca4g10410 814 SUPERFAMILY L domain-like 439 650 - -
Seca4g10410 814 Gene3D - 3 123 IPR035897 -
Seca4g10410 814 SMART till_3 10 156 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10410 Seca-Chr4 239645902 239653925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10410 140 468 WRKY Transcription Factor Family AT5G45050 33.433 9.84e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10410 - - gmx:100815297 811.216