Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10409 ATGGCTTCTTCACCCAATCCCCAATGGATCTACGACGTTTTTATCAGTTTCAGGGGAGTAGACACTCGTGAGAACTTCGTTCGTGATCTCTATGCTACGCTCTCAAATGCGGGAATCAACACTTTCCTGGACAATGAGGAGCTTCAAAAGGGACAGGAGCTGAAACCAGAACTGTTGCGAGCAATAGAAGGGTCTCAGATATCTTTAGTTGTTCTCTCTCAGAACTATAGCGGATCTAGTTGGTGTCTTAGCGAGCTGGAAAAAATCATGGAGTGCCACAGAACTTATGGCCAGGTGGTTATTCCCATATTTTACGACGTTGATCCAACGACTGTGCGTAAACAGTTTGGTGCTTTTGGAAAAGCATTGGAAGCAACGGCAGGAGAAAGAGACTCAAGGGAGGAAGAGACGGAAATGTTGTGGAGGTGGAGGATTGCACTCACCCAAGTTGCAAATTTGTCTGGTTGGGATGCGGGGGCATACAGGAATGAAGCTGAACTAGTTGAGAAAATTCTTCAGGACGTTTCTACAAAACTAGACATCTCATTTTTGTCTATTACCGGATTCCCTGTTGGATTAGAGTCCCGTGTTCGACAAGTCACCGGGTTTATTCAAAACCAATCAAGTAAAGAGGTTTGTAATTGTATAGTAGGGATCTGGGGAATGGGAGGGTCCGGTAAAACAACCCTAGCCAAAGCTATCTACAATCAAATTCATCGCCAATTTGTGGATAGAAGTTTTGTTGAAAATATTAGAGAAGTTTGTGAAAGTGATTGTAAAGGGCTTATTCATTTACAACAACAACTTCTCTCTGATGTCCTCAAAACACAGGTGAAGAAGTTACACAGCATTGCACTTGGGACAACTATGATTGAGAAAAAACTTAATGGGAAAAGGGCACTGGTTATACTTGATGATGTCACCACGCTTGAGCAATTAAAAGCACTGTGTGGAAATCATAAATGGTTTGGTTCAGGAAGTGTTTTAATTGTTACAACCAGAGATGTACGCATACTTGATTTACTTAAAGTTGACTGTGTTTGTAGAATGAAGGAGATGGACCAAAATGAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAGAGAAGCAAGTCCCAAAGAAGACTTCAGTGAACTCTCAAGAAATGTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTGAATGAAAGGACGAGACGAGAATGGGAAAGTGTATTGTTGAAACTAAAGAGAATTCCCAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTAAGGGATGACATGGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTTATCGGCAAGGATAGAGCCTATGTTACAGAGATACTAAACGGCTGTGGCTTTTATGCTGATATTGGAATAACAGTACTCATAGAGCGGAGCCTTGTAAAAGTTGATCAGAATAACAAGCTCCAAATGCATAATTTGCTAAGAGACATGGGGAGAGAAATTGTTCGTCGAAGTTCTATAAAAGAGCCTGAGAAGCGCAGTCGATTGTGGTTTCACGAGGATGTACATGATGTTTTGACAAAAAATACTGGAACAGAAGCTATTAAGGGATTGAAGTTGCAAACAAAAGGCAGAGTTTGCTTCAGTACTAATGCTTTCAAGGAAATGAAGAAACTGAGACTTATACAATTTAATCGTGTTGACCTCACTGGAGATTATGGATATCTTTCCAAAGAACTGAGATGGATCAACTGGCAACGATCTACCTTTAGATATATACCTGATGACTTTGATCTGGAACAACTAATTGTTATTGACTTAAAATACAGCAAAGTTGAACAAGTTTGGAAGGAAACCAGGTTGTTGGAGAGGCTGAAAATTCTCAATCTCAGTCATTCCAGGTACTTGAAAAACACCCCTGACTTTTCCAAACTACTGAATTTAGAAAAACTCCTTCTGAAGGATTGTCCAAGTTTGTCCGAGGTACACCAGTCCATTGGAGATCTCAGTAATCTTCTTCTGATAAATTTGACGGACTGTACTAGCCTTAGCAATCTTCCAAGGGAGATATATCAGTTGAAATCTTTGAAAACTTTAATCCTCAATGGTTGTTTAAAGATTGACAAGTTAGAAGAAGATATAGAGCAGATGGAATCCTTAACAACACTGATTGCAAAAGGTACATCTGTAAAAGAAGTGCCCTATTCATTAGTAAGGGTCTACGACGTGTTCCTGAACTTTAGAGGGGATGACACTCGCAGCAACTTCGTTTCTCATCTATATACTGCCCTCTCAAATGCCGGAATCAATACCTTCGTTGACTACAAGCTTCCAAAGGGAACAGAGCTGGAACCAGAACTATTGCGTGCAATAGAAACCTCTCAGATATCGATCGTTGTTTTCTCCAAAAACTATACTGAATCAAGCTGGTGTCTTAACGAACTGGAAAAAATCATGGAATGCCACAGAACTTATGGCCAGGTGGTTGTGCCCATATTTTATGACGTTGATCCATCGCTTGTGCGTCATCAGAAGGGTGCTTTTGGAAAAACATTGGAAGCAATTGCAAAAGAAAGATACTCAGGAGGGGAAGAGATGGAATATGTGTTGTCAAGTTGGAGGAGTGCACTCATTGAAGCTTCCAATTTGTCTGGTTGGGATGTGAGCAATTGCAGCACTGAAGGTGAACTAGTGAAGGAAATTGTTGAGGGAATTCTGACAAAACTAAATAGCACAATCTTGTCTATTACCGAATTTCCAGTTGGATTAGATTCCCGTGTACAAAAGGTGACAGAGTTTATCAAACTTCAATCAAGCGAACAAGTTTGCATAATAGGGATATGGGGAATGGGAGGGTCGGGTAAAACAACCACAGCCAAAGCCATCTACAATCAAATTCATCGCAAATTTTTGGATACAAGTTTCCTTGAAAATATTAGAGAAGTTTGTGAAAAAGATAGTAGAGGGCATATTTATTTACAAGAACAACTTCTTTCAGATGTCCTAAAAACAAAGGAGAAGATACATAGCATTGCCATGGGGACAATTATGATCGAGAAAAGACTTCGGTGGAAAAGGGCACTCATTGTACTTGATGATGTGACCACGTTTCAGCAATTAAAAGCCCTATGTGGAGATCGTAAATGGTTTGGTTCAGGAAGTGTATTAATTGTTACAACTAGAGATGTACGAATACTTAATTTACTTAAGGTTGACTATGTCTGTAGAATGATGGAAATGGATGAAAACGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAAAGAAGCAAGTCCAAGAGAAGACTTTAGGGAACTCTCAAGAAATGCAGCTGGTTACTGTGGAGGATTGCCACTAGCTCTTGAAGTTATTGGATCTTACTTATATGAAAGGACGAAACCAGAATGGAAAAGTGCAATATCAAAACTAGAGAGAATTCCCAATGATCAAGTGCAAGAGAAACTCAGAATAAGTTATGATGGTTTAAAGGATGATATGGAAAAGGACATATTTCTTGACATATGTTGTTTCTTTATCGGGAAGGATAGAGCCTATGTTACAGAGATACTAAATGGATGTGGACTTTATGCTGATATTGGAATAGCAGTCCTTATAGAGCGGAGCCTTCTAAAAGTTGAAAAGAATAACAAGCTTCAAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCATCCGTGAAAGTTCACCAAAAGAACCAGAGAAGCGTAGTCGATTGTGGTTTCACGAGGATGTAGTTAATGTTTTGACAAAAGATATTGGAACAGAAACTATTGAGGCATTGGTTTTGAAGTTGCAAAAAACAGGCAGAGTTTGCTTCAGTACTGATGCTTTCAGGGAGATGAAGAAACTGAGACTTTTACAGCTTGATCGTGTTGACCTCACTGGAGATTATGTGTATCTTTCCAAACAACTTAGATGGATCCATTGGCAGGGATTTACCTTCAACTATATACCTGATGACTTTTATCAAGGAAATCTAGTTGTTATTGACTTGAAATACAGCAATATTAAACAAGTTTGGAAGGAAACCAAGTTGTTGTTGCAGCTAAAAATTCTCAATCTCAGTCATTCTAGTTACTTAAAAAACACCCCTGACTTTTCTAAACTTCCAAATCTAGAAAAGCTCATTCTGAAGGATTGTCCAAGTTTGTCTGAGGTAGACCAGTCCATTGGAGATCTCAGTAATCTTGTTCTGATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATCAATTGAAATCTTTGAAAACTCTCATCCTTTCCGGTTGTTCAAAGATTGACAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAGCACTGATTGCAAAAGACACAGCTATAAAAGAAGTGCCCCATTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCCCTCATTTGGTCTTGGATGTCACCAACAATGAATTCCCTATCCCGTATTCCCCCAATTGGGATGTCATTGTCTCTAGTTTCCATGGATGTACAGAATAATAATAATAATAATAATATGGGCTATCTATCACCAATGCTTAGCAGACTTTCAAAACTTAGAAGTGTTTGGATACAATGCCGCTCGAAGATTCACCTAACTCAAGAATTAAGAAGATTTCTTGATAATCAATATGATGTAAATTTTACTGAATTGGAAACAACATCACTTGCACCAACCTCAGATCTTGCCTTGAGATCGCTTTTGATTGGAATGGGAAGTTGCCACATAGTTGTCGATACTCTTGGCAAGAACATATCACAGGTTCCTTCTCTACCCTCCCACCTTCACTGA 4878 0.3905 MASSPNPQWIYDVFISFRGVDTRENFVRDLYATLSNAGINTFLDNEELQKGQELKPELLRAIEGSQISLVVLSQNYSGSSWCLSELEKIMECHRTYGQVVIPIFYDVDPTTVRKQFGAFGKALEATAGERDSREEETEMLWRWRIALTQVANLSGWDAGAYRNEAELVEKILQDVSTKLDISFLSITGFPVGLESRVRQVTGFIQNQSSKEVCNCIVGIWGMGGSGKTTLAKAIYNQIHRQFVDRSFVENIREVCESDCKGLIHLQQQLLSDVLKTQVKKLHSIALGTTMIEKKLNGKRALVILDDVTTLEQLKALCGNHKWFGSGSVLIVTTRDVRILDLLKVDCVCRMKEMDQNESLELFSWHAFREASPKEDFSELSRNVVAYCGGLPLALEVLGSYLNERTRREWESVLLKLKRIPNDQVQEKLRISYDGLRDDMEKDIFLDICCFFIGKDRAYVTEILNGCGFYADIGITVLIERSLVKVDQNNKLQMHNLLRDMGREIVRRSSIKEPEKRSRLWFHEDVHDVLTKNTGTEAIKGLKLQTKGRVCFSTNAFKEMKKLRLIQFNRVDLTGDYGYLSKELRWINWQRSTFRYIPDDFDLEQLIVIDLKYSKVEQVWKETRLLERLKILNLSHSRYLKNTPDFSKLLNLEKLLLKDCPSLSEVHQSIGDLSNLLLINLTDCTSLSNLPREIYQLKSLKTLILNGCLKIDKLEEDIEQMESLTTLIAKGTSVKEVPYSLVRVYDVFLNFRGDDTRSNFVSHLYTALSNAGINTFVDYKLPKGTELEPELLRAIETSQISIVVFSKNYTESSWCLNELEKIMECHRTYGQVVVPIFYDVDPSLVRHQKGAFGKTLEAIAKERYSGGEEMEYVLSSWRSALIEASNLSGWDVSNCSTEGELVKEIVEGILTKLNSTILSITEFPVGLDSRVQKVTEFIKLQSSEQVCIIGIWGMGGSGKTTTAKAIYNQIHRKFLDTSFLENIREVCEKDSRGHIYLQEQLLSDVLKTKEKIHSIAMGTIMIEKRLRWKRALIVLDDVTTFQQLKALCGDRKWFGSGSVLIVTTRDVRILNLLKVDYVCRMMEMDENESLELFSWHAFKEASPREDFRELSRNAAGYCGGLPLALEVIGSYLYERTKPEWKSAISKLERIPNDQVQEKLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGIAVLIERSLLKVEKNNKLQMHDLLRDMGREIIRESSPKEPEKRSRLWFHEDVVNVLTKDIGTETIEALVLKLQKTGRVCFSTDAFREMKKLRLLQLDRVDLTGDYVYLSKQLRWIHWQGFTFNYIPDDFYQGNLVVIDLKYSNIKQVWKETKLLLQLKILNLSHSSYLKNTPDFSKLPNLEKLILKDCPSLSEVDQSIGDLSNLVLINLKDCTSLSNLPRKIYQLKSLKTLILSGCSKIDKLEEDIVQMESLTALIAKDTAIKEVPHSIVRSKSIGYISLCGYEGLSRDVFPSLIWSWMSPTMNSLSRIPPIGMSLSLVSMDVQNNNNNNNMGYLSPMLSRLSKLRSVWIQCRSKIHLTQELRRFLDNQYDVNFTELETTSLAPTSDLALRSLLIGMGSCHIVVDTLGKNISQVPSLPSHLH. 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10409 1625 FunFam Disease resistance protein (TIR-NBS-LRR class) 741 914 - -
Seca4g10409 1625 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 181 - -
Seca4g10409 1625 Gene3D Ribonuclease Inhibitor 494 741 IPR032675 -
Seca4g10409 1625 ProSiteProfiles TIR domain profile. 9 179 IPR000157 GO:0007165
Seca4g10409 1625 SMART AAA_5 944 1087 IPR003593 GO:0016887
Seca4g10409 1625 SMART AAA_5 213 354 IPR003593 GO:0016887
Seca4g10409 1625 Pfam NB-ARC domain 197 428 IPR002182 GO:0043531
Seca4g10409 1625 Pfam NB-ARC domain 929 1156 IPR002182 GO:0043531
Seca4g10409 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 447 IPR027417 -
Seca4g10409 1625 SUPERFAMILY L domain-like 541 773 - -
Seca4g10409 1625 Gene3D - 915 1077 IPR027417 -
Seca4g10409 1625 Gene3D - 180 347 IPR027417 -
Seca4g10409 1625 FunFam Disease resistance protein (TIR-NBS-LRR class) 354 436 - -
Seca4g10409 1625 SUPERFAMILY Toll/Interleukin receptor TIR domain 743 889 IPR035897 -
Seca4g10409 1625 SMART till_3 10 153 IPR000157 GO:0007165
Seca4g10409 1625 SMART till_3 743 886 IPR000157 GO:0007165
Seca4g10409 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 1177 IPR027417 -
Seca4g10409 1625 SUPERFAMILY L domain-like 1222 1555 - -
Seca4g10409 1625 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Seca4g10409 1625 Gene3D - 1082 1166 IPR042197 -
Seca4g10409 1625 Gene3D - 352 436 IPR042197 -
Seca4g10409 1625 PRINTS Disease resistance protein signature 623 639 - -
Seca4g10409 1625 PRINTS Disease resistance protein signature 216 231 - -
Seca4g10409 1625 PRINTS Disease resistance protein signature 294 308 - -
Seca4g10409 1625 PRINTS Disease resistance protein signature 387 401 - -
Seca4g10409 1625 Pfam TIR domain 744 919 IPR000157 GO:0007165
Seca4g10409 1625 Pfam TIR domain 11 182 IPR000157 GO:0007165
Seca4g10409 1625 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Seca4g10409 1625 Gene3D - 742 914 IPR035897 -
Seca4g10409 1625 Gene3D - 8 179 IPR035897 -
Seca4g10409 1625 ProSiteProfiles TIR domain profile. 742 912 IPR000157 GO:0007165
Seca4g10409 1625 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 744 1474 IPR044974 GO:0006952
Seca4g10409 1625 Gene3D Ribonuclease Inhibitor 1261 1596 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10409 Seca-Chr4 239612231 239643049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10409 1 740 WRKY Transcription Factor Family AT4G12020 29.129 5.36e-75 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10409 - - adu:107475204 1592.4